Hb_003910_050

Information

Type -
Description -
Location Contig3910: 43300-44315
Sequence    

Annotation

kegg
ID rcu:RCOM_1174190
description hypothetical protein
nr
ID XP_012088268.1
description PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJN9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25774 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39176: 43524-43801
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003910_050 0.0 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]
2 Hb_001105_100 0.12181527 - - PREDICTED: cathepsin B [Jatropha curcas]
3 Hb_029695_120 0.1264275624 - - hypothetical protein POPTR_0002s05320g [Populus trichocarpa]
4 Hb_004162_220 0.1283504348 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
5 Hb_001511_090 0.1304497046 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
6 Hb_000617_250 0.1317792671 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
7 Hb_005695_080 0.1387963284 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
8 Hb_001439_070 0.138796874 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_000487_370 0.1391533223 - - -
10 Hb_000416_060 0.1392247044 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
11 Hb_003040_040 0.1400824196 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 [Jatropha curcas]
12 Hb_001571_060 0.1402327209 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
13 Hb_000560_040 0.1415563074 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
14 Hb_025194_050 0.1437405331 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
15 Hb_003058_140 0.1450646672 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000260_160 0.1453644934 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
17 Hb_000094_150 0.1455568852 - - -
18 Hb_006816_010 0.1465380846 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001059_060 0.1484622778 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
20 Hb_000376_210 0.1495271992 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003910_050 Hb_003910_050 Hb_001105_100 Hb_001105_100 Hb_003910_050--Hb_001105_100 Hb_029695_120 Hb_029695_120 Hb_003910_050--Hb_029695_120 Hb_004162_220 Hb_004162_220 Hb_003910_050--Hb_004162_220 Hb_001511_090 Hb_001511_090 Hb_003910_050--Hb_001511_090 Hb_000617_250 Hb_000617_250 Hb_003910_050--Hb_000617_250 Hb_005695_080 Hb_005695_080 Hb_003910_050--Hb_005695_080 Hb_000909_080 Hb_000909_080 Hb_001105_100--Hb_000909_080 Hb_004111_030 Hb_004111_030 Hb_001105_100--Hb_004111_030 Hb_055690_010 Hb_055690_010 Hb_001105_100--Hb_055690_010 Hb_003440_020 Hb_003440_020 Hb_001105_100--Hb_003440_020 Hb_000167_120 Hb_000167_120 Hb_001105_100--Hb_000167_120 Hb_001571_060 Hb_001571_060 Hb_001105_100--Hb_001571_060 Hb_001484_090 Hb_001484_090 Hb_029695_120--Hb_001484_090 Hb_001059_060 Hb_001059_060 Hb_029695_120--Hb_001059_060 Hb_011174_080 Hb_011174_080 Hb_029695_120--Hb_011174_080 Hb_029695_120--Hb_004162_220 Hb_006816_010 Hb_006816_010 Hb_029695_120--Hb_006816_010 Hb_003058_140 Hb_003058_140 Hb_004162_220--Hb_003058_140 Hb_004577_010 Hb_004577_010 Hb_004162_220--Hb_004577_010 Hb_000172_360 Hb_000172_360 Hb_004162_220--Hb_000172_360 Hb_000976_110 Hb_000976_110 Hb_004162_220--Hb_000976_110 Hb_004162_220--Hb_006816_010 Hb_000109_260 Hb_000109_260 Hb_004162_220--Hb_000109_260 Hb_000340_040 Hb_000340_040 Hb_001511_090--Hb_000340_040 Hb_000088_260 Hb_000088_260 Hb_001511_090--Hb_000088_260 Hb_002259_170 Hb_002259_170 Hb_001511_090--Hb_002259_170 Hb_001008_130 Hb_001008_130 Hb_001511_090--Hb_001008_130 Hb_000023_360 Hb_000023_360 Hb_001511_090--Hb_000023_360 Hb_000169_020 Hb_000169_020 Hb_001511_090--Hb_000169_020 Hb_007012_030 Hb_007012_030 Hb_000617_250--Hb_007012_030 Hb_025194_050 Hb_025194_050 Hb_000617_250--Hb_025194_050 Hb_001421_090 Hb_001421_090 Hb_000617_250--Hb_001421_090 Hb_000376_210 Hb_000376_210 Hb_000617_250--Hb_000376_210 Hb_000482_050 Hb_000482_050 Hb_000617_250--Hb_000482_050 Hb_068804_090 Hb_068804_090 Hb_000617_250--Hb_068804_090 Hb_001080_030 Hb_001080_030 Hb_005695_080--Hb_001080_030 Hb_001865_010 Hb_001865_010 Hb_005695_080--Hb_001865_010 Hb_000406_190 Hb_000406_190 Hb_005695_080--Hb_000406_190 Hb_001425_010 Hb_001425_010 Hb_005695_080--Hb_001425_010 Hb_001969_130 Hb_001969_130 Hb_005695_080--Hb_001969_130 Hb_052946_010 Hb_052946_010 Hb_005695_080--Hb_052946_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.163722 1.04365 0.990864 0.841353 0.129754 0.329686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.376215 0.640982 0.0896298 0.836659 1.59212

CAGE analysis