Hb_025194_050

Information

Type -
Description -
Location Contig25194: 33035-37145
Sequence    

Annotation

kegg
ID rcu:RCOM_1078950
description aminocarboxymuconate-semialdehyde decarboxylase, putative
nr
ID XP_012085731.1
description PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
swissprot
ID A6XIG6
description 4-sulfomuconolactone hydrolase OS=Hydrogenophaga intermedia PE=1 SV=1
trembl
ID A0A067JVM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18006 PE=4 SV=1
Gene Ontology
ID GO:0003824
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26336: 33167-36956 , PASA_asmbl_26337: 34769-34927 , PASA_asmbl_26338: 35607-35689
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025194_050 0.0 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
2 Hb_001105_040 0.0617406156 - - PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000617_250 0.0743932032 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
4 Hb_000270_480 0.0772301078 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
5 Hb_001832_200 0.0811768449 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
6 Hb_007012_030 0.0818855642 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
7 Hb_068079_010 0.0828562716 - - -
8 Hb_000108_020 0.0832143456 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
9 Hb_000032_500 0.0837740296 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
10 Hb_001511_090 0.0883113324 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
11 Hb_000291_180 0.0909701173 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
12 Hb_134849_010 0.0914076762 - - ATP synthase subunit d, putative [Ricinus communis]
13 Hb_004957_030 0.09170145 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
14 Hb_000128_060 0.0924379138 - - PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis vinifera]
15 Hb_002828_060 0.0941076934 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
16 Hb_001439_070 0.094463241 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_048093_010 0.0951823499 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
18 Hb_008705_020 0.0951921704 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
19 Hb_002249_080 0.0960117108 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
20 Hb_000748_090 0.096393057 - - glucose inhibited division protein A, putative [Ricinus communis]

Gene co-expression network

sample Hb_025194_050 Hb_025194_050 Hb_001105_040 Hb_001105_040 Hb_025194_050--Hb_001105_040 Hb_000617_250 Hb_000617_250 Hb_025194_050--Hb_000617_250 Hb_000270_480 Hb_000270_480 Hb_025194_050--Hb_000270_480 Hb_001832_200 Hb_001832_200 Hb_025194_050--Hb_001832_200 Hb_007012_030 Hb_007012_030 Hb_025194_050--Hb_007012_030 Hb_068079_010 Hb_068079_010 Hb_025194_050--Hb_068079_010 Hb_001105_040--Hb_001832_200 Hb_000032_500 Hb_000032_500 Hb_001105_040--Hb_000032_500 Hb_000128_060 Hb_000128_060 Hb_001105_040--Hb_000128_060 Hb_016219_010 Hb_016219_010 Hb_001105_040--Hb_016219_010 Hb_008705_020 Hb_008705_020 Hb_001105_040--Hb_008705_020 Hb_000617_250--Hb_007012_030 Hb_001421_090 Hb_001421_090 Hb_000617_250--Hb_001421_090 Hb_000376_210 Hb_000376_210 Hb_000617_250--Hb_000376_210 Hb_000482_050 Hb_000482_050 Hb_000617_250--Hb_000482_050 Hb_068804_090 Hb_068804_090 Hb_000617_250--Hb_068804_090 Hb_000088_260 Hb_000088_260 Hb_000270_480--Hb_000088_260 Hb_000270_480--Hb_000128_060 Hb_001675_140 Hb_001675_140 Hb_000270_480--Hb_001675_140 Hb_007545_010 Hb_007545_010 Hb_000270_480--Hb_007545_010 Hb_000023_360 Hb_000023_360 Hb_000270_480--Hb_000023_360 Hb_001882_010 Hb_001882_010 Hb_001832_200--Hb_001882_010 Hb_010863_050 Hb_010863_050 Hb_001832_200--Hb_010863_050 Hb_000108_020 Hb_000108_020 Hb_001832_200--Hb_000108_020 Hb_001832_200--Hb_068079_010 Hb_000748_090 Hb_000748_090 Hb_007012_030--Hb_000748_090 Hb_002600_070 Hb_002600_070 Hb_007012_030--Hb_002600_070 Hb_007012_030--Hb_068804_090 Hb_007012_030--Hb_000482_050 Hb_004324_360 Hb_004324_360 Hb_007012_030--Hb_004324_360 Hb_002828_060 Hb_002828_060 Hb_068079_010--Hb_002828_060 Hb_068079_010--Hb_000108_020 Hb_000862_100 Hb_000862_100 Hb_068079_010--Hb_000862_100 Hb_022693_130 Hb_022693_130 Hb_068079_010--Hb_022693_130 Hb_000645_180 Hb_000645_180 Hb_068079_010--Hb_000645_180 Hb_004705_160 Hb_004705_160 Hb_068079_010--Hb_004705_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.12627 6.82915 12.2353 10.2626 2.86644 4.32227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.19711 4.34637 2.57648 6.94406 16.1663

CAGE analysis