Hb_000862_100

Information

Type -
Description -
Location Contig862: 176741-193033
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05630g
description hypothetical protein
nr
ID XP_012079392.1
description PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
swissprot
ID Q8VY16
description Plastid division protein CDP1, chloroplastic OS=Arabidopsis thaliana GN=CDP1 PE=1 SV=2
trembl
ID A0A067LBQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17419 PE=4 SV=1
Gene Ontology
ID GO:0043621
description plastid division protein chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60847: 177770-177887 , PASA_asmbl_60848: 178078-178581 , PASA_asmbl_60849: 178784-193008 , PASA_asmbl_60850: 183240-183539
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000862_100 0.0 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
2 Hb_004705_160 0.0645792383 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
3 Hb_006970_020 0.0664374748 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
4 Hb_068079_010 0.0687399724 - - -
5 Hb_000815_300 0.0693362611 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
6 Hb_001159_060 0.0715938527 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
7 Hb_000406_210 0.0743722793 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
8 Hb_005305_130 0.0787436357 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
9 Hb_000748_090 0.0789394288 - - glucose inhibited division protein A, putative [Ricinus communis]
10 Hb_015884_020 0.0829465295 - - PREDICTED: protein PIR [Jatropha curcas]
11 Hb_002828_060 0.0833085212 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
12 Hb_004324_360 0.085207498 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
13 Hb_002684_020 0.0854084432 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
14 Hb_005914_040 0.0862865313 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
15 Hb_022250_010 0.0866828783 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
16 Hb_000270_190 0.0872563711 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
17 Hb_000358_210 0.0881590213 - - oligosaccharyl transferase, putative [Ricinus communis]
18 Hb_001541_150 0.0884864015 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001504_010 0.0889310162 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
20 Hb_021596_020 0.0893428913 - - hypothetical protein JCGZ_02034 [Jatropha curcas]

Gene co-expression network

sample Hb_000862_100 Hb_000862_100 Hb_004705_160 Hb_004705_160 Hb_000862_100--Hb_004705_160 Hb_006970_020 Hb_006970_020 Hb_000862_100--Hb_006970_020 Hb_068079_010 Hb_068079_010 Hb_000862_100--Hb_068079_010 Hb_000815_300 Hb_000815_300 Hb_000862_100--Hb_000815_300 Hb_001159_060 Hb_001159_060 Hb_000862_100--Hb_001159_060 Hb_000406_210 Hb_000406_210 Hb_000862_100--Hb_000406_210 Hb_138585_030 Hb_138585_030 Hb_004705_160--Hb_138585_030 Hb_000208_190 Hb_000208_190 Hb_004705_160--Hb_000208_190 Hb_000748_090 Hb_000748_090 Hb_004705_160--Hb_000748_090 Hb_004705_160--Hb_068079_010 Hb_000788_030 Hb_000788_030 Hb_004705_160--Hb_000788_030 Hb_006970_020--Hb_000815_300 Hb_011377_040 Hb_011377_040 Hb_006970_020--Hb_011377_040 Hb_002684_020 Hb_002684_020 Hb_006970_020--Hb_002684_020 Hb_000078_140 Hb_000078_140 Hb_006970_020--Hb_000078_140 Hb_015884_020 Hb_015884_020 Hb_006970_020--Hb_015884_020 Hb_002828_060 Hb_002828_060 Hb_068079_010--Hb_002828_060 Hb_000108_020 Hb_000108_020 Hb_068079_010--Hb_000108_020 Hb_022693_130 Hb_022693_130 Hb_068079_010--Hb_022693_130 Hb_000645_180 Hb_000645_180 Hb_068079_010--Hb_000645_180 Hb_002552_040 Hb_002552_040 Hb_000815_300--Hb_002552_040 Hb_000815_300--Hb_000406_210 Hb_000815_300--Hb_000078_140 Hb_001141_240 Hb_001141_240 Hb_000815_300--Hb_001141_240 Hb_074197_040 Hb_074197_040 Hb_000815_300--Hb_074197_040 Hb_001159_060--Hb_000406_210 Hb_001159_060--Hb_000815_300 Hb_000172_360 Hb_000172_360 Hb_001159_060--Hb_000172_360 Hb_005305_130 Hb_005305_130 Hb_001159_060--Hb_005305_130 Hb_009158_060 Hb_009158_060 Hb_001159_060--Hb_009158_060 Hb_005846_050 Hb_005846_050 Hb_000406_210--Hb_005846_050 Hb_008289_040 Hb_008289_040 Hb_000406_210--Hb_008289_040 Hb_000103_290 Hb_000103_290 Hb_000406_210--Hb_000103_290 Hb_000406_210--Hb_002552_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.87491 3.25146 5.71566 5.19142 2.904 2.26348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.3627 1.78394 1.7864 3.66254 6.74993

CAGE analysis