Hb_000406_210

Information

Type -
Description -
Location Contig406: 183850-193559
Sequence    

Annotation

kegg
ID rcu:RCOM_1429140
description hypothetical protein
nr
ID XP_012089175.1
description PREDICTED: protein HASTY 1 [Jatropha curcas]
swissprot
ID Q0WP44
description Protein HASTY 1 OS=Arabidopsis thaliana GN=HST1 PE=1 SV=1
trembl
ID B9REW0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1429140 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein hasty 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40283: 183949-185407 , PASA_asmbl_40285: 185717-188083 , PASA_asmbl_40286: 188501-189328 , PASA_asmbl_40287: 189342-190118 , PASA_asmbl_40288: 190335-191227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_210 0.0 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
2 Hb_005846_050 0.0554307942 - - PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
3 Hb_001159_060 0.0589181541 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
4 Hb_000815_300 0.0615236989 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
5 Hb_008289_040 0.0645796606 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
6 Hb_000103_290 0.0686291377 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
7 Hb_002552_040 0.0727236188 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
8 Hb_000862_100 0.0743722793 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
9 Hb_001587_030 0.0753226869 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
10 Hb_001141_240 0.0768768916 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
11 Hb_003758_010 0.076900549 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
12 Hb_065500_020 0.0774416747 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
13 Hb_006970_020 0.0793299001 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
14 Hb_000954_010 0.0795908 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
15 Hb_001504_060 0.0838750117 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
16 Hb_060980_010 0.0842006085 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
17 Hb_016172_030 0.0845948024 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
18 Hb_000363_290 0.0865650965 - - fimbrin, putative [Ricinus communis]
19 Hb_002687_180 0.0865751787 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
20 Hb_000173_130 0.0866979414 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000406_210 Hb_000406_210 Hb_005846_050 Hb_005846_050 Hb_000406_210--Hb_005846_050 Hb_001159_060 Hb_001159_060 Hb_000406_210--Hb_001159_060 Hb_000815_300 Hb_000815_300 Hb_000406_210--Hb_000815_300 Hb_008289_040 Hb_008289_040 Hb_000406_210--Hb_008289_040 Hb_000103_290 Hb_000103_290 Hb_000406_210--Hb_000103_290 Hb_002552_040 Hb_002552_040 Hb_000406_210--Hb_002552_040 Hb_005846_050--Hb_002552_040 Hb_001587_030 Hb_001587_030 Hb_005846_050--Hb_001587_030 Hb_005846_050--Hb_008289_040 Hb_065500_020 Hb_065500_020 Hb_005846_050--Hb_065500_020 Hb_001504_060 Hb_001504_060 Hb_005846_050--Hb_001504_060 Hb_001159_060--Hb_000815_300 Hb_000862_100 Hb_000862_100 Hb_001159_060--Hb_000862_100 Hb_000172_360 Hb_000172_360 Hb_001159_060--Hb_000172_360 Hb_005305_130 Hb_005305_130 Hb_001159_060--Hb_005305_130 Hb_009158_060 Hb_009158_060 Hb_001159_060--Hb_009158_060 Hb_000815_300--Hb_002552_040 Hb_006970_020 Hb_006970_020 Hb_000815_300--Hb_006970_020 Hb_000078_140 Hb_000078_140 Hb_000815_300--Hb_000078_140 Hb_001141_240 Hb_001141_240 Hb_000815_300--Hb_001141_240 Hb_074197_040 Hb_074197_040 Hb_000815_300--Hb_074197_040 Hb_021165_010 Hb_021165_010 Hb_008289_040--Hb_021165_010 Hb_016172_030 Hb_016172_030 Hb_008289_040--Hb_016172_030 Hb_000173_130 Hb_000173_130 Hb_008289_040--Hb_000173_130 Hb_008289_040--Hb_065500_020 Hb_000703_330 Hb_000703_330 Hb_008289_040--Hb_000703_330 Hb_048476_080 Hb_048476_080 Hb_000103_290--Hb_048476_080 Hb_000103_290--Hb_016172_030 Hb_000954_010 Hb_000954_010 Hb_000103_290--Hb_000954_010 Hb_060980_010 Hb_060980_010 Hb_000103_290--Hb_060980_010 Hb_027506_010 Hb_027506_010 Hb_000103_290--Hb_027506_010 Hb_024650_080 Hb_024650_080 Hb_000103_290--Hb_024650_080 Hb_002687_180 Hb_002687_180 Hb_002552_040--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_002552_040--Hb_004228_120 Hb_001279_190 Hb_001279_190 Hb_002552_040--Hb_001279_190 Hb_065968_010 Hb_065968_010 Hb_002552_040--Hb_065968_010 Hb_002552_040--Hb_006970_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34581 3.9889 5.88779 5.79519 3.14949 2.35481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.81848 2.07945 2.50774 4.98092 5.71534

CAGE analysis