Hb_002687_180

Information

Type -
Description -
Location Contig2687: 189399-194795
Sequence    

Annotation

kegg
ID fve:101305656
description phytochrome-associated serine/threonine-protein phosphatase-like
nr
ID XP_012068561.1
description PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
swissprot
ID Q8LSN3
description Phytochrome-associated serine/threonine-protein phosphatase OS=Pisum sativum GN=FYPP PE=1 SV=1
trembl
ID A0A067KW78
description Serine/threonine-protein phosphatase OS=Jatropha curcas GN=JCGZ_24465 PE=3 SV=1
Gene Ontology
ID GO:0005737
description phytochrome-associated serine threonine-protein phosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28083: 189164-194769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002687_180 0.0 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
2 Hb_001279_190 0.0552807829 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
3 Hb_004228_120 0.0600385054 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
4 Hb_001250_050 0.0612305984 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
5 Hb_002304_050 0.0617005785 - - pyruvate kinase, putative [Ricinus communis]
6 Hb_002552_040 0.0621446083 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
7 Hb_005741_040 0.0668931033 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
8 Hb_011716_010 0.067907555 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
9 Hb_004724_390 0.0708536165 - - PREDICTED: nicalin-1-like [Populus euphratica]
10 Hb_013726_050 0.0731071897 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
11 Hb_006438_020 0.074152861 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
12 Hb_007483_070 0.0747790999 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
13 Hb_006120_050 0.0753509915 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
14 Hb_002317_010 0.076569559 - - PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Jatropha curcas]
15 Hb_008289_040 0.0771730799 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
16 Hb_002045_170 0.077974802 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
17 Hb_000317_110 0.0785675312 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
18 Hb_001504_010 0.0806069419 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
19 Hb_002445_030 0.0812622743 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
20 Hb_000753_160 0.0812775014 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]

Gene co-expression network

sample Hb_002687_180 Hb_002687_180 Hb_001279_190 Hb_001279_190 Hb_002687_180--Hb_001279_190 Hb_004228_120 Hb_004228_120 Hb_002687_180--Hb_004228_120 Hb_001250_050 Hb_001250_050 Hb_002687_180--Hb_001250_050 Hb_002304_050 Hb_002304_050 Hb_002687_180--Hb_002304_050 Hb_002552_040 Hb_002552_040 Hb_002687_180--Hb_002552_040 Hb_005741_040 Hb_005741_040 Hb_002687_180--Hb_005741_040 Hb_007483_070 Hb_007483_070 Hb_001279_190--Hb_007483_070 Hb_001279_190--Hb_004228_120 Hb_011716_010 Hb_011716_010 Hb_001279_190--Hb_011716_010 Hb_001279_190--Hb_001250_050 Hb_001227_120 Hb_001227_120 Hb_001279_190--Hb_001227_120 Hb_004228_120--Hb_002552_040 Hb_159809_070 Hb_159809_070 Hb_004228_120--Hb_159809_070 Hb_004228_120--Hb_001227_120 Hb_004228_120--Hb_011716_010 Hb_003777_030 Hb_003777_030 Hb_001250_050--Hb_003777_030 Hb_000753_160 Hb_000753_160 Hb_001250_050--Hb_000753_160 Hb_002739_120 Hb_002739_120 Hb_001250_050--Hb_002739_120 Hb_008289_040 Hb_008289_040 Hb_001250_050--Hb_008289_040 Hb_002304_050--Hb_000753_160 Hb_013726_050 Hb_013726_050 Hb_002304_050--Hb_013726_050 Hb_003449_100 Hb_003449_100 Hb_002304_050--Hb_003449_100 Hb_002304_050--Hb_001250_050 Hb_002272_240 Hb_002272_240 Hb_002304_050--Hb_002272_240 Hb_000815_300 Hb_000815_300 Hb_002552_040--Hb_000815_300 Hb_002552_040--Hb_001279_190 Hb_065968_010 Hb_065968_010 Hb_002552_040--Hb_065968_010 Hb_006970_020 Hb_006970_020 Hb_002552_040--Hb_006970_020 Hb_000260_400 Hb_000260_400 Hb_005741_040--Hb_000260_400 Hb_005741_040--Hb_013726_050 Hb_002849_050 Hb_002849_050 Hb_005741_040--Hb_002849_050 Hb_000599_360 Hb_000599_360 Hb_005741_040--Hb_000599_360 Hb_000317_110 Hb_000317_110 Hb_005741_040--Hb_000317_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.87191 7.79107 14.548 13.0857 4.59164 4.19146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.39681 3.47112 4.53639 9.19521 7.91844

CAGE analysis