Hb_003777_030

Information

Type -
Description -
Location Contig3777: 14531-34905
Sequence    

Annotation

kegg
ID atr:s00030p00056570
description AMTR_s00030p00056570; hypothetical protein
nr
ID XP_002532433.1
description Exocyst complex component, putative [Ricinus communis]
swissprot
ID Q8S3U9
description Exocyst complex component SEC5A OS=Arabidopsis thaliana GN=SEC5A PE=1 SV=1
trembl
ID U5D6N8
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00030p00056570 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component sec5a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38426: 31149-31951 , PASA_asmbl_38427: 32486-32841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_030 0.0 - - Exocyst complex component, putative [Ricinus communis]
2 Hb_000665_170 0.0478639504 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
3 Hb_001250_050 0.0533254903 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
4 Hb_007545_010 0.0588239697 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
5 Hb_132082_010 0.0720695649 - - hypothetical protein VITISV_030895 [Vitis vinifera]
6 Hb_000815_300 0.0753677775 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
7 Hb_000256_230 0.0755638432 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
8 Hb_002687_200 0.0783938612 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002552_040 0.0792875372 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
10 Hb_003209_130 0.0801804869 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
11 Hb_002739_120 0.0814116514 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
12 Hb_002740_080 0.0821429368 - - flap endonuclease-1, putative [Ricinus communis]
13 Hb_010672_020 0.0821980799 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
14 Hb_000418_020 0.0833684437 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
15 Hb_008289_040 0.0850208218 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
16 Hb_004531_150 0.0859313273 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
17 Hb_001159_060 0.0863277012 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
18 Hb_002486_050 0.0873500303 - - Multiple inositol polyphosphate phosphatase 1 precursor, putative [Ricinus communis]
19 Hb_001141_240 0.0878432583 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
20 Hb_011310_110 0.0878553971 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003777_030 Hb_003777_030 Hb_000665_170 Hb_000665_170 Hb_003777_030--Hb_000665_170 Hb_001250_050 Hb_001250_050 Hb_003777_030--Hb_001250_050 Hb_007545_010 Hb_007545_010 Hb_003777_030--Hb_007545_010 Hb_132082_010 Hb_132082_010 Hb_003777_030--Hb_132082_010 Hb_000815_300 Hb_000815_300 Hb_003777_030--Hb_000815_300 Hb_000256_230 Hb_000256_230 Hb_003777_030--Hb_000256_230 Hb_000665_170--Hb_000256_230 Hb_010672_020 Hb_010672_020 Hb_000665_170--Hb_010672_020 Hb_003209_130 Hb_003209_130 Hb_000665_170--Hb_003209_130 Hb_000665_170--Hb_007545_010 Hb_000389_030 Hb_000389_030 Hb_000665_170--Hb_000389_030 Hb_002687_180 Hb_002687_180 Hb_001250_050--Hb_002687_180 Hb_001279_190 Hb_001279_190 Hb_001250_050--Hb_001279_190 Hb_000753_160 Hb_000753_160 Hb_001250_050--Hb_000753_160 Hb_002739_120 Hb_002739_120 Hb_001250_050--Hb_002739_120 Hb_008289_040 Hb_008289_040 Hb_001250_050--Hb_008289_040 Hb_007545_010--Hb_000815_300 Hb_011310_110 Hb_011310_110 Hb_007545_010--Hb_011310_110 Hb_006970_020 Hb_006970_020 Hb_007545_010--Hb_006970_020 Hb_000139_080 Hb_000139_080 Hb_007545_010--Hb_000139_080 Hb_000342_170 Hb_000342_170 Hb_132082_010--Hb_000342_170 Hb_132082_010--Hb_000665_170 Hb_132082_010--Hb_007545_010 Hb_132082_010--Hb_002739_120 Hb_000926_340 Hb_000926_340 Hb_132082_010--Hb_000926_340 Hb_002552_040 Hb_002552_040 Hb_000815_300--Hb_002552_040 Hb_000815_300--Hb_006970_020 Hb_000406_210 Hb_000406_210 Hb_000815_300--Hb_000406_210 Hb_000078_140 Hb_000078_140 Hb_000815_300--Hb_000078_140 Hb_001141_240 Hb_001141_240 Hb_000815_300--Hb_001141_240 Hb_074197_040 Hb_074197_040 Hb_000815_300--Hb_074197_040 Hb_000256_230--Hb_000389_030 Hb_000256_230--Hb_003209_130 Hb_004126_040 Hb_004126_040 Hb_000256_230--Hb_004126_040 Hb_000622_110 Hb_000622_110 Hb_000256_230--Hb_000622_110 Hb_002486_050 Hb_002486_050 Hb_000256_230--Hb_002486_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68731 3.7184 5.04519 7.30662 1.65299 2.50196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65821 2.10798 1.59356 3.60818 4.74765

CAGE analysis