Hb_007545_010

Information

Type -
Description -
Location Contig7545: 2267-11426
Sequence    

Annotation

kegg
ID rcu:RCOM_0845240
description HIV-1 rev binding protein, hrbl, putative
nr
ID XP_002530953.1
description HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
swissprot
ID Q8RXE7
description Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2
trembl
ID B9SY84
description HIV-1 rev binding protein, hrbl, putative OS=Ricinus communis GN=RCOM_0845240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56980: 4686-11384 , PASA_asmbl_56981: 4818-11284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007545_010 0.0 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
2 Hb_003777_030 0.0588239697 - - Exocyst complex component, putative [Ricinus communis]
3 Hb_000815_300 0.0695634603 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
4 Hb_011310_110 0.0703660176 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
5 Hb_006970_020 0.0712178993 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
6 Hb_000665_170 0.0716071819 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
7 Hb_000139_080 0.0719511563 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
8 Hb_001029_040 0.0722108375 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
9 Hb_010672_020 0.0737106936 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
10 Hb_001141_240 0.0746444056 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
11 Hb_005977_100 0.0773509044 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
12 Hb_015099_030 0.0789023219 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
13 Hb_004957_030 0.0798686086 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
14 Hb_028487_070 0.08167343 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000270_480 0.0818801281 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
16 Hb_000212_420 0.0833834955 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
17 Hb_001157_230 0.0834180945 - - Protein AFR, putative [Ricinus communis]
18 Hb_006120_050 0.083777757 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
19 Hb_024184_010 0.087005066 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
20 Hb_006210_010 0.0873910694 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007545_010 Hb_007545_010 Hb_003777_030 Hb_003777_030 Hb_007545_010--Hb_003777_030 Hb_000815_300 Hb_000815_300 Hb_007545_010--Hb_000815_300 Hb_011310_110 Hb_011310_110 Hb_007545_010--Hb_011310_110 Hb_006970_020 Hb_006970_020 Hb_007545_010--Hb_006970_020 Hb_000665_170 Hb_000665_170 Hb_007545_010--Hb_000665_170 Hb_000139_080 Hb_000139_080 Hb_007545_010--Hb_000139_080 Hb_003777_030--Hb_000665_170 Hb_001250_050 Hb_001250_050 Hb_003777_030--Hb_001250_050 Hb_132082_010 Hb_132082_010 Hb_003777_030--Hb_132082_010 Hb_003777_030--Hb_000815_300 Hb_000256_230 Hb_000256_230 Hb_003777_030--Hb_000256_230 Hb_002552_040 Hb_002552_040 Hb_000815_300--Hb_002552_040 Hb_000815_300--Hb_006970_020 Hb_000406_210 Hb_000406_210 Hb_000815_300--Hb_000406_210 Hb_000078_140 Hb_000078_140 Hb_000815_300--Hb_000078_140 Hb_001141_240 Hb_001141_240 Hb_000815_300--Hb_001141_240 Hb_074197_040 Hb_074197_040 Hb_000815_300--Hb_074197_040 Hb_010672_020 Hb_010672_020 Hb_011310_110--Hb_010672_020 Hb_006120_050 Hb_006120_050 Hb_011310_110--Hb_006120_050 Hb_000049_020 Hb_000049_020 Hb_011310_110--Hb_000049_020 Hb_000705_230 Hb_000705_230 Hb_011310_110--Hb_000705_230 Hb_011310_110--Hb_000665_170 Hb_011377_040 Hb_011377_040 Hb_006970_020--Hb_011377_040 Hb_002684_020 Hb_002684_020 Hb_006970_020--Hb_002684_020 Hb_006970_020--Hb_000078_140 Hb_000862_100 Hb_000862_100 Hb_006970_020--Hb_000862_100 Hb_015884_020 Hb_015884_020 Hb_006970_020--Hb_015884_020 Hb_000665_170--Hb_000256_230 Hb_000665_170--Hb_010672_020 Hb_003209_130 Hb_003209_130 Hb_000665_170--Hb_003209_130 Hb_000389_030 Hb_000389_030 Hb_000665_170--Hb_000389_030 Hb_003098_070 Hb_003098_070 Hb_000139_080--Hb_003098_070 Hb_033312_040 Hb_033312_040 Hb_000139_080--Hb_033312_040 Hb_000139_080--Hb_000078_140 Hb_006189_020 Hb_006189_020 Hb_000139_080--Hb_006189_020 Hb_003626_070 Hb_003626_070 Hb_000139_080--Hb_003626_070 Hb_000169_020 Hb_000169_020 Hb_000139_080--Hb_000169_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.85205 9.8502 12.0246 18.1857 4.91333 6.4793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.24849 5.07967 5.55488 8.68992 15.0581

CAGE analysis