Hb_033312_040

Information

Type -
Description -
Location Contig33312: 65842-72584
Sequence    

Annotation

kegg
ID vvi:100247210
description gamma-tubulin complex component 5-like
nr
ID XP_012077806.1
description PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
swissprot
ID Q95K09
description Gamma-tubulin complex component 5 (Fragment) OS=Macaca fascicularis GN=TUBGCP5 PE=2 SV=2
trembl
ID A0A067KLP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13440 PE=4 SV=1
Gene Ontology
ID GO:0000922
description gamma-tubulin complex component 5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34953: 66312-67207 , PASA_asmbl_34954: 68202-68497 , PASA_asmbl_34955: 69375-70057 , PASA_asmbl_34957: 70455-72367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033312_040 0.0 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
2 Hb_006189_020 0.0480705354 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
3 Hb_000510_360 0.0510091658 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
4 Hb_001481_060 0.0527673839 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
5 Hb_000139_080 0.0540352996 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
6 Hb_004333_040 0.0546736761 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
7 Hb_003098_070 0.0580042736 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
8 Hb_000085_170 0.0608142626 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
9 Hb_003758_010 0.0610618853 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
10 Hb_002411_110 0.062258088 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
11 Hb_021165_010 0.0626497963 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
12 Hb_000702_090 0.0631006681 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
13 Hb_000773_040 0.0637261502 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
14 Hb_002071_070 0.0639470359 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
15 Hb_007894_150 0.0645534508 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
16 Hb_004324_360 0.0657170958 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
17 Hb_007248_030 0.0657196303 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
18 Hb_007413_010 0.0666912678 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
19 Hb_000409_050 0.0667499711 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
20 Hb_027506_010 0.0668502234 - - PREDICTED: cullin-4 [Jatropha curcas]

Gene co-expression network

sample Hb_033312_040 Hb_033312_040 Hb_006189_020 Hb_006189_020 Hb_033312_040--Hb_006189_020 Hb_000510_360 Hb_000510_360 Hb_033312_040--Hb_000510_360 Hb_001481_060 Hb_001481_060 Hb_033312_040--Hb_001481_060 Hb_000139_080 Hb_000139_080 Hb_033312_040--Hb_000139_080 Hb_004333_040 Hb_004333_040 Hb_033312_040--Hb_004333_040 Hb_003098_070 Hb_003098_070 Hb_033312_040--Hb_003098_070 Hb_000409_050 Hb_000409_050 Hb_006189_020--Hb_000409_050 Hb_006189_020--Hb_004333_040 Hb_001817_170 Hb_001817_170 Hb_006189_020--Hb_001817_170 Hb_006189_020--Hb_000510_360 Hb_006189_020--Hb_000139_080 Hb_000085_170 Hb_000085_170 Hb_000510_360--Hb_000085_170 Hb_003758_010 Hb_003758_010 Hb_000510_360--Hb_003758_010 Hb_000321_140 Hb_000321_140 Hb_000510_360--Hb_000321_140 Hb_000510_360--Hb_001817_170 Hb_001716_020 Hb_001716_020 Hb_001481_060--Hb_001716_020 Hb_007248_030 Hb_007248_030 Hb_001481_060--Hb_007248_030 Hb_002492_010 Hb_002492_010 Hb_001481_060--Hb_002492_010 Hb_000345_160 Hb_000345_160 Hb_001481_060--Hb_000345_160 Hb_004037_020 Hb_004037_020 Hb_001481_060--Hb_004037_020 Hb_000139_080--Hb_003098_070 Hb_000078_140 Hb_000078_140 Hb_000139_080--Hb_000078_140 Hb_003626_070 Hb_003626_070 Hb_000139_080--Hb_003626_070 Hb_000169_020 Hb_000169_020 Hb_000139_080--Hb_000169_020 Hb_000189_600 Hb_000189_600 Hb_004333_040--Hb_000189_600 Hb_000699_150 Hb_000699_150 Hb_004333_040--Hb_000699_150 Hb_004333_040--Hb_000510_360 Hb_183433_010 Hb_183433_010 Hb_004333_040--Hb_183433_010 Hb_000365_230 Hb_000365_230 Hb_003098_070--Hb_000365_230 Hb_003098_070--Hb_006189_020 Hb_000476_060 Hb_000476_060 Hb_003098_070--Hb_000476_060 Hb_003098_070--Hb_000078_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.72343 7.43232 8.96163 7.39185 4.26053 5.42224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.24817 4.19291 4.80119 7.47055 7.77492

CAGE analysis