Hb_000345_160

Information

Type -
Description -
Location Contig345: 160248-171926
Sequence    

Annotation

kegg
ID rcu:RCOM_1432720
description acyl-CoA binding protein, putative
nr
ID XP_012089029.1
description PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
swissprot
ID Q9MA55
description Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1
trembl
ID A0A067JVC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23327 PE=4 SV=1
Gene Ontology
ID GO:0000062
description acyl- -binding domain-containing protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35992: 160225-171835 , PASA_asmbl_35993: 161212-161506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_160 0.0 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
2 Hb_004037_020 0.0509394344 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
3 Hb_004705_170 0.0516698887 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
4 Hb_001481_060 0.0518788599 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
5 Hb_000049_020 0.053692412 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
6 Hb_000170_090 0.054720482 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
7 Hb_004452_110 0.0552728269 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
8 Hb_001856_180 0.0557662621 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
9 Hb_002883_030 0.0557854273 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
10 Hb_000215_300 0.057229945 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
11 Hb_007248_030 0.0588890308 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
12 Hb_000976_140 0.0625944686 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
13 Hb_003581_200 0.063130839 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
14 Hb_000787_160 0.0634739038 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
15 Hb_000313_220 0.0635109935 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
16 Hb_004102_170 0.0639483386 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
17 Hb_000300_270 0.0642968555 - - cationic amino acid transporter, putative [Ricinus communis]
18 Hb_002989_020 0.066143774 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
19 Hb_001405_210 0.0680188906 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
20 Hb_086063_020 0.0683370933 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_160 Hb_000345_160 Hb_004037_020 Hb_004037_020 Hb_000345_160--Hb_004037_020 Hb_004705_170 Hb_004705_170 Hb_000345_160--Hb_004705_170 Hb_001481_060 Hb_001481_060 Hb_000345_160--Hb_001481_060 Hb_000049_020 Hb_000049_020 Hb_000345_160--Hb_000049_020 Hb_000170_090 Hb_000170_090 Hb_000345_160--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000345_160--Hb_004452_110 Hb_016172_030 Hb_016172_030 Hb_004037_020--Hb_016172_030 Hb_004037_020--Hb_001481_060 Hb_086063_020 Hb_086063_020 Hb_004037_020--Hb_086063_020 Hb_000317_100 Hb_000317_100 Hb_004037_020--Hb_000317_100 Hb_004037_020--Hb_004705_170 Hb_000215_300 Hb_000215_300 Hb_004705_170--Hb_000215_300 Hb_007472_070 Hb_007472_070 Hb_004705_170--Hb_007472_070 Hb_000778_010 Hb_000778_010 Hb_004705_170--Hb_000778_010 Hb_163175_010 Hb_163175_010 Hb_004705_170--Hb_163175_010 Hb_001716_020 Hb_001716_020 Hb_001481_060--Hb_001716_020 Hb_007248_030 Hb_007248_030 Hb_001481_060--Hb_007248_030 Hb_002492_010 Hb_002492_010 Hb_001481_060--Hb_002492_010 Hb_033312_040 Hb_033312_040 Hb_001481_060--Hb_033312_040 Hb_000300_270 Hb_000300_270 Hb_000049_020--Hb_000300_270 Hb_000256_150 Hb_000256_150 Hb_000049_020--Hb_000256_150 Hb_004102_170 Hb_004102_170 Hb_000049_020--Hb_004102_170 Hb_002883_030 Hb_002883_030 Hb_000049_020--Hb_002883_030 Hb_000049_020--Hb_000215_300 Hb_105328_020 Hb_105328_020 Hb_000170_090--Hb_105328_020 Hb_001377_310 Hb_001377_310 Hb_000170_090--Hb_001377_310 Hb_004586_220 Hb_004586_220 Hb_000170_090--Hb_004586_220 Hb_013399_020 Hb_013399_020 Hb_000170_090--Hb_013399_020 Hb_000976_140 Hb_000976_140 Hb_000170_090--Hb_000976_140 Hb_004452_110--Hb_000976_140 Hb_004452_110--Hb_000300_270 Hb_002046_160 Hb_002046_160 Hb_004452_110--Hb_002046_160 Hb_005730_040 Hb_005730_040 Hb_004452_110--Hb_005730_040 Hb_000313_220 Hb_000313_220 Hb_004452_110--Hb_000313_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1744 13.784 16.2504 21.492 10.8762 14.4036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4906 9.64028 9.5899 14.6537 16.6911

CAGE analysis