Hb_001716_020

Information

Type -
Description -
Location Contig1716: 30224-39944
Sequence    

Annotation

kegg
ID rcu:RCOM_1591720
description hydrolase, putative
nr
ID XP_002510264.1
description hydrolase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7H1
description Hydrolase, putative OS=Ricinus communis GN=RCOM_1591720 PE=4 SV=1
Gene Ontology
ID GO:0016787
description calcineurin-like metallo-phosphoesterase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16047: 30398-31112 , PASA_asmbl_16048: 34237-39847 , PASA_asmbl_16049: 31160-36373
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001716_020 0.0 - - hydrolase, putative [Ricinus communis]
2 Hb_002492_010 0.0364425602 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
3 Hb_001481_060 0.0465009725 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
4 Hb_105105_010 0.0492518249 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
5 Hb_002205_250 0.0520174098 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
6 Hb_000028_130 0.0520853981 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
7 Hb_000029_060 0.055667779 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
8 Hb_001089_050 0.0557058086 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
9 Hb_079326_020 0.057876227 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001195_530 0.0615161519 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003906_200 0.0626603698 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
12 Hb_005730_040 0.064891932 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
13 Hb_002110_080 0.0651830352 - - FH interacting protein 1 [Theobroma cacao]
14 Hb_000614_210 0.0653506934 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
15 Hb_004916_010 0.0666626325 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
16 Hb_011849_040 0.0669521332 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_031042_050 0.0676057024 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
18 Hb_000402_230 0.0677864491 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
19 Hb_001473_110 0.0683355172 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
20 Hb_004143_100 0.0683975788 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001716_020 Hb_001716_020 Hb_002492_010 Hb_002492_010 Hb_001716_020--Hb_002492_010 Hb_001481_060 Hb_001481_060 Hb_001716_020--Hb_001481_060 Hb_105105_010 Hb_105105_010 Hb_001716_020--Hb_105105_010 Hb_002205_250 Hb_002205_250 Hb_001716_020--Hb_002205_250 Hb_000028_130 Hb_000028_130 Hb_001716_020--Hb_000028_130 Hb_000029_060 Hb_000029_060 Hb_001716_020--Hb_000029_060 Hb_002492_010--Hb_001481_060 Hb_000087_060 Hb_000087_060 Hb_002492_010--Hb_000087_060 Hb_004994_240 Hb_004994_240 Hb_002492_010--Hb_004994_240 Hb_001089_050 Hb_001089_050 Hb_002492_010--Hb_001089_050 Hb_004143_100 Hb_004143_100 Hb_002492_010--Hb_004143_100 Hb_007248_030 Hb_007248_030 Hb_001481_060--Hb_007248_030 Hb_000345_160 Hb_000345_160 Hb_001481_060--Hb_000345_160 Hb_033312_040 Hb_033312_040 Hb_001481_060--Hb_033312_040 Hb_004037_020 Hb_004037_020 Hb_001481_060--Hb_004037_020 Hb_105105_010--Hb_002205_250 Hb_001408_140 Hb_001408_140 Hb_105105_010--Hb_001408_140 Hb_001195_530 Hb_001195_530 Hb_105105_010--Hb_001195_530 Hb_003835_070 Hb_003835_070 Hb_105105_010--Hb_003835_070 Hb_105105_010--Hb_002492_010 Hb_002205_250--Hb_003835_070 Hb_000614_210 Hb_000614_210 Hb_002205_250--Hb_000614_210 Hb_001814_030 Hb_001814_030 Hb_002205_250--Hb_001814_030 Hb_000243_210 Hb_000243_210 Hb_002205_250--Hb_000243_210 Hb_031042_050 Hb_031042_050 Hb_000028_130--Hb_031042_050 Hb_001635_120 Hb_001635_120 Hb_000028_130--Hb_001635_120 Hb_000017_220 Hb_000017_220 Hb_000028_130--Hb_000017_220 Hb_001473_110 Hb_001473_110 Hb_000028_130--Hb_001473_110 Hb_003494_020 Hb_003494_020 Hb_000028_130--Hb_003494_020 Hb_003849_110 Hb_003849_110 Hb_000029_060--Hb_003849_110 Hb_004916_010 Hb_004916_010 Hb_000029_060--Hb_004916_010 Hb_002110_080 Hb_002110_080 Hb_000029_060--Hb_002110_080 Hb_000086_420 Hb_000086_420 Hb_000029_060--Hb_000086_420 Hb_000327_140 Hb_000327_140 Hb_000029_060--Hb_000327_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.31049 12.2178 8.773 9.89495 6.57132 8.94858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.90678 7.16203 7.78398 7.79903 8.902

CAGE analysis