Hb_000243_210

Information

Type -
Description -
Location Contig243: 184762-188907
Sequence    

Annotation

kegg
ID rcu:RCOM_0779060
description protein with unknown function
nr
ID XP_002533303.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q96EZ8
description Microspherule protein 1 OS=Homo sapiens GN=MCRS1 PE=1 SV=1
trembl
ID B9T4Y4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0779060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25372: 184747-184909 , PASA_asmbl_25373: 185214-185317 , PASA_asmbl_25374: 185418-186615 , PASA_asmbl_25375: 187912-188685 , PASA_asmbl_25376: 186685-188433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_210 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_001318_070 0.0282058146 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
3 Hb_000099_040 0.0511813778 - - unnamed protein product [Coffea canephora]
4 Hb_000174_060 0.0518726676 - - zinc finger family protein [Populus trichocarpa]
5 Hb_000671_070 0.052478951 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
6 Hb_002205_250 0.0525886065 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
7 Hb_000879_040 0.0563180717 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
8 Hb_000866_460 0.058064968 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
9 Hb_000836_410 0.0618067894 - - sec10, putative [Ricinus communis]
10 Hb_001191_120 0.0640084662 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
11 Hb_001268_280 0.0652776878 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001322_130 0.065362512 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
13 Hb_000563_130 0.0659642899 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
14 Hb_001277_300 0.0663574411 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
15 Hb_012194_030 0.0667590001 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
16 Hb_000329_370 0.0667626261 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
17 Hb_004976_010 0.0668003364 - - hypothetical protein RCOM_1429110 [Ricinus communis]
18 Hb_029977_040 0.0677656622 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
19 Hb_140049_040 0.0678005896 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
20 Hb_002253_080 0.0678762651 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000243_210 Hb_000243_210 Hb_001318_070 Hb_001318_070 Hb_000243_210--Hb_001318_070 Hb_000099_040 Hb_000099_040 Hb_000243_210--Hb_000099_040 Hb_000174_060 Hb_000174_060 Hb_000243_210--Hb_000174_060 Hb_000671_070 Hb_000671_070 Hb_000243_210--Hb_000671_070 Hb_002205_250 Hb_002205_250 Hb_000243_210--Hb_002205_250 Hb_000879_040 Hb_000879_040 Hb_000243_210--Hb_000879_040 Hb_001318_070--Hb_000879_040 Hb_001318_070--Hb_000099_040 Hb_001318_070--Hb_000174_060 Hb_001268_280 Hb_001268_280 Hb_001318_070--Hb_001268_280 Hb_001318_070--Hb_002205_250 Hb_029977_040 Hb_029977_040 Hb_000099_040--Hb_029977_040 Hb_001673_050 Hb_001673_050 Hb_000099_040--Hb_001673_050 Hb_001279_120 Hb_001279_120 Hb_000099_040--Hb_001279_120 Hb_001534_210 Hb_001534_210 Hb_000099_040--Hb_001534_210 Hb_004129_070 Hb_004129_070 Hb_000174_060--Hb_004129_070 Hb_140049_040 Hb_140049_040 Hb_000174_060--Hb_140049_040 Hb_001767_140 Hb_001767_140 Hb_000174_060--Hb_001767_140 Hb_159558_010 Hb_159558_010 Hb_000174_060--Hb_159558_010 Hb_009615_170 Hb_009615_170 Hb_000174_060--Hb_009615_170 Hb_001191_120 Hb_001191_120 Hb_000671_070--Hb_001191_120 Hb_000025_320 Hb_000025_320 Hb_000671_070--Hb_000025_320 Hb_000914_120 Hb_000914_120 Hb_000671_070--Hb_000914_120 Hb_089140_050 Hb_089140_050 Hb_000671_070--Hb_089140_050 Hb_006420_040 Hb_006420_040 Hb_000671_070--Hb_006420_040 Hb_105105_010 Hb_105105_010 Hb_002205_250--Hb_105105_010 Hb_003835_070 Hb_003835_070 Hb_002205_250--Hb_003835_070 Hb_000614_210 Hb_000614_210 Hb_002205_250--Hb_000614_210 Hb_001814_030 Hb_001814_030 Hb_002205_250--Hb_001814_030 Hb_001716_020 Hb_001716_020 Hb_002205_250--Hb_001716_020 Hb_012055_110 Hb_012055_110 Hb_000879_040--Hb_012055_110 Hb_000027_050 Hb_000027_050 Hb_000879_040--Hb_000027_050 Hb_000879_040--Hb_000099_040 Hb_001430_080 Hb_001430_080 Hb_000879_040--Hb_001430_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.63669 14.5084 11.3792 8.92513 12.1027 10.6124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.36254 6.10762 7.67908 9.18784 11.7429

CAGE analysis