Hb_000879_040

Information

Type -
Description -
Location Contig879: 59618-80802
Sequence    

Annotation

kegg
ID rcu:RCOM_1586900
description cation-transporting atpase, putative (EC:3.6.3.8)
nr
ID XP_012068199.1
description PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
swissprot
ID Q9SY55
description Calcium-transporting ATPase 3, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA3 PE=2 SV=3
trembl
ID B9R6Y5
description Calcium-transporting ATPase OS=Ricinus communis GN=RCOM_1586900 PE=3 SV=1
Gene Ontology
ID GO:0005802
description calcium-transporting atpase endoplasmic reticulum-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61343: 59517-80827 , PASA_asmbl_61344: 60264-71964 , PASA_asmbl_61346: 62208-62349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_040 0.0 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
2 Hb_001318_070 0.0500191801 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
3 Hb_000243_210 0.0563180717 - - protein with unknown function [Ricinus communis]
4 Hb_012055_110 0.0598880869 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
5 Hb_000027_050 0.061374309 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
6 Hb_000099_040 0.0617853738 - - unnamed protein product [Coffea canephora]
7 Hb_001430_080 0.0623203773 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
8 Hb_003943_010 0.0636280871 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000398_080 0.065412086 - - tip120, putative [Ricinus communis]
10 Hb_000996_020 0.0658619517 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
11 Hb_000008_240 0.0660129307 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000795_040 0.0660874549 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
13 Hb_001723_140 0.0661262428 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
14 Hb_001268_280 0.0667691876 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005402_040 0.0678723929 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
16 Hb_011972_020 0.0682022563 - - protein binding protein, putative [Ricinus communis]
17 Hb_007044_110 0.0682281233 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_002205_250 0.068531332 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
19 Hb_002007_110 0.0691763981 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
20 Hb_000457_230 0.0702245039 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000879_040 Hb_000879_040 Hb_001318_070 Hb_001318_070 Hb_000879_040--Hb_001318_070 Hb_000243_210 Hb_000243_210 Hb_000879_040--Hb_000243_210 Hb_012055_110 Hb_012055_110 Hb_000879_040--Hb_012055_110 Hb_000027_050 Hb_000027_050 Hb_000879_040--Hb_000027_050 Hb_000099_040 Hb_000099_040 Hb_000879_040--Hb_000099_040 Hb_001430_080 Hb_001430_080 Hb_000879_040--Hb_001430_080 Hb_001318_070--Hb_000243_210 Hb_001318_070--Hb_000099_040 Hb_000174_060 Hb_000174_060 Hb_001318_070--Hb_000174_060 Hb_001268_280 Hb_001268_280 Hb_001318_070--Hb_001268_280 Hb_002205_250 Hb_002205_250 Hb_001318_070--Hb_002205_250 Hb_000243_210--Hb_000099_040 Hb_000243_210--Hb_000174_060 Hb_000671_070 Hb_000671_070 Hb_000243_210--Hb_000671_070 Hb_000243_210--Hb_002205_250 Hb_002007_110 Hb_002007_110 Hb_012055_110--Hb_002007_110 Hb_000066_150 Hb_000066_150 Hb_012055_110--Hb_000066_150 Hb_000958_050 Hb_000958_050 Hb_012055_110--Hb_000958_050 Hb_002357_070 Hb_002357_070 Hb_012055_110--Hb_002357_070 Hb_005701_050 Hb_005701_050 Hb_012055_110--Hb_005701_050 Hb_001723_140 Hb_001723_140 Hb_000027_050--Hb_001723_140 Hb_003943_010 Hb_003943_010 Hb_000027_050--Hb_003943_010 Hb_001935_160 Hb_001935_160 Hb_000027_050--Hb_001935_160 Hb_000252_050 Hb_000252_050 Hb_000027_050--Hb_000252_050 Hb_000027_050--Hb_001268_280 Hb_029977_040 Hb_029977_040 Hb_000099_040--Hb_029977_040 Hb_001673_050 Hb_001673_050 Hb_000099_040--Hb_001673_050 Hb_001279_120 Hb_001279_120 Hb_000099_040--Hb_001279_120 Hb_001534_210 Hb_001534_210 Hb_000099_040--Hb_001534_210 Hb_000011_100 Hb_000011_100 Hb_001430_080--Hb_000011_100 Hb_001277_020 Hb_001277_020 Hb_001430_080--Hb_001277_020 Hb_004976_010 Hb_004976_010 Hb_001430_080--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001430_080--Hb_000645_170 Hb_003835_070 Hb_003835_070 Hb_001430_080--Hb_003835_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.59567 12.7636 10.9955 8.48209 8.3528 9.28086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.72664 4.8501 5.80918 10.4053 11.5784

CAGE analysis