Hb_000671_070

Information

Type -
Description -
Location Contig671: 81716-89546
Sequence    

Annotation

kegg
ID rcu:RCOM_1035820
description hypothetical protein
nr
ID XP_012067883.1
description PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
swissprot
ID Q9LME6
description Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana GN=MBD8 PE=2 SV=1
trembl
ID A0A067LA57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15797 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53415: 82026-82450 , PASA_asmbl_53416: 82512-84607 , PASA_asmbl_53419: 86245-89508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000671_070 0.0 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
2 Hb_001191_120 0.0447954388 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
3 Hb_000025_320 0.0478595074 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
4 Hb_000243_210 0.052478951 - - protein with unknown function [Ricinus communis]
5 Hb_000914_120 0.0543482351 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
6 Hb_089140_050 0.0571231915 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
7 Hb_006420_040 0.058309347 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
8 Hb_012395_140 0.0615154353 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
9 Hb_000174_060 0.0637136156 - - zinc finger family protein [Populus trichocarpa]
10 Hb_000563_130 0.063732272 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
11 Hb_008024_030 0.0642954061 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
12 Hb_001550_060 0.065178177 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
13 Hb_001318_070 0.0655802503 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
14 Hb_004453_110 0.0686984961 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
15 Hb_140049_040 0.0689263385 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
16 Hb_000230_090 0.069393117 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
17 Hb_000329_370 0.0696343979 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
18 Hb_002350_010 0.0699514047 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
19 Hb_000441_120 0.070662398 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001379_110 0.0710051064 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]

Gene co-expression network

sample Hb_000671_070 Hb_000671_070 Hb_001191_120 Hb_001191_120 Hb_000671_070--Hb_001191_120 Hb_000025_320 Hb_000025_320 Hb_000671_070--Hb_000025_320 Hb_000243_210 Hb_000243_210 Hb_000671_070--Hb_000243_210 Hb_000914_120 Hb_000914_120 Hb_000671_070--Hb_000914_120 Hb_089140_050 Hb_089140_050 Hb_000671_070--Hb_089140_050 Hb_006420_040 Hb_006420_040 Hb_000671_070--Hb_006420_040 Hb_001191_120--Hb_000025_320 Hb_002350_010 Hb_002350_010 Hb_001191_120--Hb_002350_010 Hb_000025_710 Hb_000025_710 Hb_001191_120--Hb_000025_710 Hb_001191_120--Hb_000243_210 Hb_001191_120--Hb_000914_120 Hb_001550_060 Hb_001550_060 Hb_000025_320--Hb_001550_060 Hb_000960_100 Hb_000960_100 Hb_000025_320--Hb_000960_100 Hb_002022_070 Hb_002022_070 Hb_000025_320--Hb_002022_070 Hb_000025_320--Hb_006420_040 Hb_001318_070 Hb_001318_070 Hb_000243_210--Hb_001318_070 Hb_000099_040 Hb_000099_040 Hb_000243_210--Hb_000099_040 Hb_000174_060 Hb_000174_060 Hb_000243_210--Hb_000174_060 Hb_002205_250 Hb_002205_250 Hb_000243_210--Hb_002205_250 Hb_000879_040 Hb_000879_040 Hb_000243_210--Hb_000879_040 Hb_000230_090 Hb_000230_090 Hb_000914_120--Hb_000230_090 Hb_008695_110 Hb_008695_110 Hb_000914_120--Hb_008695_110 Hb_001268_280 Hb_001268_280 Hb_000914_120--Hb_001268_280 Hb_000264_030 Hb_000264_030 Hb_000914_120--Hb_000264_030 Hb_001767_140 Hb_001767_140 Hb_000914_120--Hb_001767_140 Hb_004453_110 Hb_004453_110 Hb_089140_050--Hb_004453_110 Hb_000429_220 Hb_000429_220 Hb_089140_050--Hb_000429_220 Hb_000261_030 Hb_000261_030 Hb_089140_050--Hb_000261_030 Hb_011344_020 Hb_011344_020 Hb_089140_050--Hb_011344_020 Hb_000035_410 Hb_000035_410 Hb_089140_050--Hb_000035_410 Hb_006420_040--Hb_001550_060 Hb_000441_120 Hb_000441_120 Hb_006420_040--Hb_000441_120 Hb_003206_130 Hb_003206_130 Hb_006420_040--Hb_003206_130 Hb_009503_030 Hb_009503_030 Hb_006420_040--Hb_009503_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.44799 9.60622 6.56345 5.2585 10.3 7.8527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.3693 4.30011 5.45406 6.85195 8.55672

CAGE analysis