Hb_000230_090

Information

Type -
Description -
Location Contig230: 101819-113491
Sequence    

Annotation

kegg
ID rcu:RCOM_1429050
description nucleotide binding protein, putative (EC:2.7.11.7)
nr
ID XP_012089192.1
description PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
swissprot
ID Q05B17
description WD repeat-containing protein 48 OS=Xenopus tropicalis GN=wdr48 PE=2 SV=1
trembl
ID A0A067JI36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23444 PE=4 SV=1
Gene Ontology
ID GO:0005515
description wd repeat-containing protein 48-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23989: 101922-102067 , PASA_asmbl_23990: 103289-113451
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_090 0.0 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
2 Hb_000960_050 0.0410232246 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
3 Hb_000914_120 0.0463163406 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
4 Hb_000679_340 0.0497466638 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
5 Hb_140049_040 0.0588479821 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
6 Hb_000836_410 0.0590711742 - - sec10, putative [Ricinus communis]
7 Hb_008695_110 0.061378966 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
8 Hb_000174_060 0.0618370275 - - zinc finger family protein [Populus trichocarpa]
9 Hb_001021_200 0.0637460722 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
10 Hb_022256_060 0.0646111637 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
11 Hb_001767_140 0.0655310549 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
12 Hb_003633_070 0.0656775128 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
13 Hb_000264_030 0.0667013721 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
14 Hb_008568_020 0.0673188015 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
15 Hb_000671_070 0.069393117 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
16 Hb_000243_210 0.0697953722 - - protein with unknown function [Ricinus communis]
17 Hb_012305_030 0.0700241566 - - hypothetical protein JCGZ_18979 [Jatropha curcas]
18 Hb_007929_080 0.070509246 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
19 Hb_002701_150 0.0706363239 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
20 Hb_000786_040 0.0710117362 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_090 Hb_000230_090 Hb_000960_050 Hb_000960_050 Hb_000230_090--Hb_000960_050 Hb_000914_120 Hb_000914_120 Hb_000230_090--Hb_000914_120 Hb_000679_340 Hb_000679_340 Hb_000230_090--Hb_000679_340 Hb_140049_040 Hb_140049_040 Hb_000230_090--Hb_140049_040 Hb_000836_410 Hb_000836_410 Hb_000230_090--Hb_000836_410 Hb_008695_110 Hb_008695_110 Hb_000230_090--Hb_008695_110 Hb_008112_030 Hb_008112_030 Hb_000960_050--Hb_008112_030 Hb_009112_010 Hb_009112_010 Hb_000960_050--Hb_009112_010 Hb_000406_230 Hb_000406_230 Hb_000960_050--Hb_000406_230 Hb_000960_050--Hb_000914_120 Hb_000174_060 Hb_000174_060 Hb_000960_050--Hb_000174_060 Hb_000914_120--Hb_008695_110 Hb_000671_070 Hb_000671_070 Hb_000914_120--Hb_000671_070 Hb_001268_280 Hb_001268_280 Hb_000914_120--Hb_001268_280 Hb_000264_030 Hb_000264_030 Hb_000914_120--Hb_000264_030 Hb_001767_140 Hb_001767_140 Hb_000914_120--Hb_001767_140 Hb_022256_060 Hb_022256_060 Hb_000679_340--Hb_022256_060 Hb_005965_030 Hb_005965_030 Hb_000679_340--Hb_005965_030 Hb_003633_070 Hb_003633_070 Hb_000679_340--Hb_003633_070 Hb_008887_020 Hb_008887_020 Hb_000679_340--Hb_008887_020 Hb_000922_020 Hb_000922_020 Hb_000679_340--Hb_000922_020 Hb_140049_040--Hb_000174_060 Hb_000289_040 Hb_000289_040 Hb_140049_040--Hb_000289_040 Hb_140049_040--Hb_001767_140 Hb_002876_130 Hb_002876_130 Hb_140049_040--Hb_002876_130 Hb_001277_020 Hb_001277_020 Hb_140049_040--Hb_001277_020 Hb_000390_230 Hb_000390_230 Hb_000836_410--Hb_000390_230 Hb_008568_020 Hb_008568_020 Hb_000836_410--Hb_008568_020 Hb_002701_150 Hb_002701_150 Hb_000836_410--Hb_002701_150 Hb_000457_230 Hb_000457_230 Hb_000836_410--Hb_000457_230 Hb_000243_210 Hb_000243_210 Hb_000836_410--Hb_000243_210 Hb_000084_250 Hb_000084_250 Hb_008695_110--Hb_000084_250 Hb_138596_010 Hb_138596_010 Hb_008695_110--Hb_138596_010 Hb_008695_110--Hb_022256_060 Hb_000574_440 Hb_000574_440 Hb_008695_110--Hb_000574_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1795 15.0836 12.0591 8.10907 13.8605 14.779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.14355 6.57585 6.09197 8.50166 9.87432

CAGE analysis