Hb_008887_020

Information

Type -
Description -
Location Contig8887: 3198-16053
Sequence    

Annotation

kegg
ID pop:POPTR_0012s00450g
description POPTRDRAFT_772578; hypothetical protein
nr
ID XP_012074783.1
description PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
swissprot
ID B8D298
description Endonuclease MutS2 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=mutS2 PE=3 SV=1
trembl
ID A0A067LMH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14917 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna mismatch repair protein msh3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61532: 4179-6478 , PASA_asmbl_61533: 7390-11855 , PASA_asmbl_61535: 15023-15624
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008887_020 0.0 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
2 Hb_022256_060 0.0443181312 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
3 Hb_000679_340 0.0653110346 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
4 Hb_027760_080 0.0680189792 - - cytochrome P450, putative [Ricinus communis]
5 Hb_005332_020 0.0707760974 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
6 Hb_000914_120 0.0717857768 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
7 Hb_000230_090 0.0734508131 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
8 Hb_000922_020 0.0738858907 - - protein binding protein, putative [Ricinus communis]
9 Hb_001821_160 0.0764559904 - - serine/arginine rich splicing factor, putative [Ricinus communis]
10 Hb_000640_310 0.077550766 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
11 Hb_008695_110 0.0796306922 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
12 Hb_001799_050 0.0798540099 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
13 Hb_001143_250 0.0800344937 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
14 Hb_002701_150 0.0803064662 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
15 Hb_001636_050 0.081264941 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
16 Hb_000160_350 0.0819261208 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
17 Hb_000402_120 0.0821430439 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
18 Hb_000963_130 0.0825293162 - - RNA m5u methyltransferase, putative [Ricinus communis]
19 Hb_000318_120 0.0835871683 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
20 Hb_079526_030 0.083849776 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]

Gene co-expression network

sample Hb_008887_020 Hb_008887_020 Hb_022256_060 Hb_022256_060 Hb_008887_020--Hb_022256_060 Hb_000679_340 Hb_000679_340 Hb_008887_020--Hb_000679_340 Hb_027760_080 Hb_027760_080 Hb_008887_020--Hb_027760_080 Hb_005332_020 Hb_005332_020 Hb_008887_020--Hb_005332_020 Hb_000914_120 Hb_000914_120 Hb_008887_020--Hb_000914_120 Hb_000230_090 Hb_000230_090 Hb_008887_020--Hb_000230_090 Hb_022256_060--Hb_000679_340 Hb_008695_110 Hb_008695_110 Hb_022256_060--Hb_008695_110 Hb_022256_060--Hb_000230_090 Hb_000160_350 Hb_000160_350 Hb_022256_060--Hb_000160_350 Hb_001821_160 Hb_001821_160 Hb_022256_060--Hb_001821_160 Hb_000679_340--Hb_000230_090 Hb_005965_030 Hb_005965_030 Hb_000679_340--Hb_005965_030 Hb_003633_070 Hb_003633_070 Hb_000679_340--Hb_003633_070 Hb_000922_020 Hb_000922_020 Hb_000679_340--Hb_000922_020 Hb_000640_310 Hb_000640_310 Hb_027760_080--Hb_000640_310 Hb_001799_050 Hb_001799_050 Hb_027760_080--Hb_001799_050 Hb_000092_020 Hb_000092_020 Hb_027760_080--Hb_000092_020 Hb_027760_080--Hb_022256_060 Hb_001143_250 Hb_001143_250 Hb_027760_080--Hb_001143_250 Hb_001953_150 Hb_001953_150 Hb_005332_020--Hb_001953_150 Hb_002422_050 Hb_002422_050 Hb_005332_020--Hb_002422_050 Hb_000152_260 Hb_000152_260 Hb_005332_020--Hb_000152_260 Hb_005332_020--Hb_001143_250 Hb_002374_260 Hb_002374_260 Hb_005332_020--Hb_002374_260 Hb_000914_120--Hb_000230_090 Hb_000914_120--Hb_008695_110 Hb_000671_070 Hb_000671_070 Hb_000914_120--Hb_000671_070 Hb_001268_280 Hb_001268_280 Hb_000914_120--Hb_001268_280 Hb_000264_030 Hb_000264_030 Hb_000914_120--Hb_000264_030 Hb_001767_140 Hb_001767_140 Hb_000914_120--Hb_001767_140 Hb_000960_050 Hb_000960_050 Hb_000230_090--Hb_000960_050 Hb_140049_040 Hb_140049_040 Hb_000230_090--Hb_140049_040 Hb_000836_410 Hb_000836_410 Hb_000230_090--Hb_000836_410 Hb_000230_090--Hb_008695_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.90321 7.34112 6.60118 3.21219 8.73596 7.06871
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.82215 4.63703 2.74068 4.56678 6.53845

CAGE analysis