Hb_000152_260

Information

Type -
Description -
Location Contig152: 209501-233352
Sequence    

Annotation

kegg
ID rcu:RCOM_1498840
description cleavage and polyadenylation specificity factor cpsf, putative
nr
ID XP_012090388.1
description PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
swissprot
ID Q9FGR0
description Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2
trembl
ID A0A067JEX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26213 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cleavage and polyadenylation specificity factor subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12970: 209401-212190 , PASA_asmbl_12971: 212251-214712 , PASA_asmbl_12972: 216747-227481 , PASA_asmbl_12973: 229770-232406 , PASA_asmbl_12974: 232664-233210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_260 0.0 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
2 Hb_002749_110 0.0609602407 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
3 Hb_001427_190 0.065158798 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
4 Hb_002422_050 0.0667472372 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
5 Hb_160459_040 0.0694906861 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
6 Hb_002374_260 0.0700835782 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
7 Hb_003878_110 0.07098717 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
8 Hb_002093_030 0.071608783 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
9 Hb_005332_020 0.0717388853 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
10 Hb_000007_280 0.0726029772 - - hypothetical protein VITISV_000066 [Vitis vinifera]
11 Hb_002078_100 0.0734347801 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
12 Hb_022256_060 0.0743802009 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
13 Hb_000914_120 0.0745821499 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
14 Hb_000896_080 0.0753638918 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Vitis vinifera]
15 Hb_003549_090 0.0769044988 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
16 Hb_002684_040 0.0779295541 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
17 Hb_000796_190 0.0779464453 - - hypothetical protein F383_31148 [Gossypium arboreum]
18 Hb_000960_050 0.0798148206 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
19 Hb_004453_110 0.0809402274 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
20 Hb_000777_050 0.0810881981 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]

Gene co-expression network

sample Hb_000152_260 Hb_000152_260 Hb_002749_110 Hb_002749_110 Hb_000152_260--Hb_002749_110 Hb_001427_190 Hb_001427_190 Hb_000152_260--Hb_001427_190 Hb_002422_050 Hb_002422_050 Hb_000152_260--Hb_002422_050 Hb_160459_040 Hb_160459_040 Hb_000152_260--Hb_160459_040 Hb_002374_260 Hb_002374_260 Hb_000152_260--Hb_002374_260 Hb_003878_110 Hb_003878_110 Hb_000152_260--Hb_003878_110 Hb_002093_030 Hb_002093_030 Hb_002749_110--Hb_002093_030 Hb_001473_090 Hb_001473_090 Hb_002749_110--Hb_001473_090 Hb_001599_030 Hb_001599_030 Hb_002749_110--Hb_001599_030 Hb_000107_400 Hb_000107_400 Hb_002749_110--Hb_000107_400 Hb_003126_100 Hb_003126_100 Hb_002749_110--Hb_003126_100 Hb_011930_080 Hb_011930_080 Hb_001427_190--Hb_011930_080 Hb_001935_110 Hb_001935_110 Hb_001427_190--Hb_001935_110 Hb_019654_040 Hb_019654_040 Hb_001427_190--Hb_019654_040 Hb_002078_100 Hb_002078_100 Hb_001427_190--Hb_002078_100 Hb_002888_070 Hb_002888_070 Hb_001427_190--Hb_002888_070 Hb_001417_050 Hb_001417_050 Hb_002422_050--Hb_001417_050 Hb_004453_110 Hb_004453_110 Hb_002422_050--Hb_004453_110 Hb_001493_040 Hb_001493_040 Hb_002422_050--Hb_001493_040 Hb_005332_020 Hb_005332_020 Hb_002422_050--Hb_005332_020 Hb_000010_360 Hb_000010_360 Hb_002422_050--Hb_000010_360 Hb_005053_010 Hb_005053_010 Hb_160459_040--Hb_005053_010 Hb_009771_110 Hb_009771_110 Hb_160459_040--Hb_009771_110 Hb_012053_080 Hb_012053_080 Hb_160459_040--Hb_012053_080 Hb_000261_030 Hb_000261_030 Hb_160459_040--Hb_000261_030 Hb_002631_140 Hb_002631_140 Hb_160459_040--Hb_002631_140 Hb_028872_070 Hb_028872_070 Hb_160459_040--Hb_028872_070 Hb_002374_260--Hb_003878_110 Hb_003638_090 Hb_003638_090 Hb_002374_260--Hb_003638_090 Hb_002304_060 Hb_002304_060 Hb_002374_260--Hb_002304_060 Hb_001377_110 Hb_001377_110 Hb_002374_260--Hb_001377_110 Hb_002374_260--Hb_005332_020 Hb_002684_040 Hb_002684_040 Hb_003878_110--Hb_002684_040 Hb_001433_070 Hb_001433_070 Hb_003878_110--Hb_001433_070 Hb_000331_110 Hb_000331_110 Hb_003878_110--Hb_000331_110 Hb_079526_030 Hb_079526_030 Hb_003878_110--Hb_079526_030 Hb_001143_180 Hb_001143_180 Hb_003878_110--Hb_001143_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.92044 4.91989 5.34471 3.88157 7.15766 9.09116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62217 3.29194 2.40823 4.6079 4.98664

CAGE analysis