Hb_001493_040

Information

Type -
Description -
Location Contig1493: 48346-51513
Sequence    

Annotation

kegg
ID rcu:RCOM_0995410
description FACT complex subunit SPT16, putative
nr
ID XP_012068781.1
description PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
swissprot
ID O82491
description FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1
trembl
ID A0A067KWM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24615 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001493_040 0.0 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
2 Hb_001417_050 0.0511002722 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
3 Hb_000935_090 0.0602125326 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
4 Hb_034243_020 0.060233753 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
5 Hb_010315_090 0.0603576305 - - suppressor of ty, putative [Ricinus communis]
6 Hb_000160_290 0.0621324311 - - unnamed protein product [Vitis vinifera]
7 Hb_002422_050 0.0635019647 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
8 Hb_000796_190 0.0650193906 - - hypothetical protein F383_31148 [Gossypium arboreum]
9 Hb_007576_120 0.0672412526 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
10 Hb_117552_010 0.0701578292 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002235_160 0.0724232942 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
12 Hb_002174_020 0.0729283405 - - ring finger protein, putative [Ricinus communis]
13 Hb_000997_030 0.0742776212 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
14 Hb_006252_020 0.0751223614 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
15 Hb_000109_100 0.0760874793 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
16 Hb_004543_030 0.076733524 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
17 Hb_002301_080 0.0768601268 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
18 Hb_148909_030 0.0775260811 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
19 Hb_133047_010 0.0781648659 - - xanthine dehydrogenase, putative [Ricinus communis]
20 Hb_007426_130 0.0787256537 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]

Gene co-expression network

sample Hb_001493_040 Hb_001493_040 Hb_001417_050 Hb_001417_050 Hb_001493_040--Hb_001417_050 Hb_000935_090 Hb_000935_090 Hb_001493_040--Hb_000935_090 Hb_034243_020 Hb_034243_020 Hb_001493_040--Hb_034243_020 Hb_010315_090 Hb_010315_090 Hb_001493_040--Hb_010315_090 Hb_000160_290 Hb_000160_290 Hb_001493_040--Hb_000160_290 Hb_002422_050 Hb_002422_050 Hb_001493_040--Hb_002422_050 Hb_001417_050--Hb_000160_290 Hb_001417_050--Hb_010315_090 Hb_001417_050--Hb_002422_050 Hb_006252_020 Hb_006252_020 Hb_001417_050--Hb_006252_020 Hb_000796_190 Hb_000796_190 Hb_001417_050--Hb_000796_190 Hb_001178_150 Hb_001178_150 Hb_000935_090--Hb_001178_150 Hb_000935_090--Hb_001417_050 Hb_000935_090--Hb_000796_190 Hb_000025_650 Hb_000025_650 Hb_000935_090--Hb_000025_650 Hb_004429_160 Hb_004429_160 Hb_000935_090--Hb_004429_160 Hb_004543_030 Hb_004543_030 Hb_034243_020--Hb_004543_030 Hb_004884_010 Hb_004884_010 Hb_034243_020--Hb_004884_010 Hb_007576_120 Hb_007576_120 Hb_034243_020--Hb_007576_120 Hb_034243_020--Hb_010315_090 Hb_133047_010 Hb_133047_010 Hb_034243_020--Hb_133047_010 Hb_000329_130 Hb_000329_130 Hb_010315_090--Hb_000329_130 Hb_019153_020 Hb_019153_020 Hb_010315_090--Hb_019153_020 Hb_010315_090--Hb_004884_010 Hb_140049_020 Hb_140049_020 Hb_010315_090--Hb_140049_020 Hb_002174_020 Hb_002174_020 Hb_000160_290--Hb_002174_020 Hb_000922_370 Hb_000922_370 Hb_000160_290--Hb_000922_370 Hb_002235_160 Hb_002235_160 Hb_000160_290--Hb_002235_160 Hb_003044_020 Hb_003044_020 Hb_000160_290--Hb_003044_020 Hb_004453_110 Hb_004453_110 Hb_002422_050--Hb_004453_110 Hb_000152_260 Hb_000152_260 Hb_002422_050--Hb_000152_260 Hb_005332_020 Hb_005332_020 Hb_002422_050--Hb_005332_020 Hb_000010_360 Hb_000010_360 Hb_002422_050--Hb_000010_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.776 18.3408 7.72618 7.90282 17.6146 22.1753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.92983 5.14094 6.70636 12.5039 12.4984

CAGE analysis