Hb_133047_010

Information

Type -
Description -
Location Contig133047: 6000-23741
Sequence    

Annotation

kegg
ID rcu:RCOM_1577610
description xanthine dehydrogenase, putative (EC:1.17.3.2)
nr
ID XP_002513485.1
description xanthine dehydrogenase, putative [Ricinus communis]
swissprot
ID Q8GUQ8
description Xanthine dehydrogenase 1 OS=Arabidopsis thaliana GN=XDH1 PE=1 SV=1
trembl
ID B9RIB6
description Xanthine dehydrogenase, putative OS=Ricinus communis GN=RCOM_1577610 PE=4 SV=1
Gene Ontology
ID GO:0005506
description xanthine dehydrogenase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09464: 5960-19798 , PASA_asmbl_09465: 20117-20549 , PASA_asmbl_09466: 20764-23613
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133047_010 0.0 - - xanthine dehydrogenase, putative [Ricinus communis]
2 Hb_111985_080 0.0513807095 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
3 Hb_004884_010 0.0546383231 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
4 Hb_002392_030 0.0570924629 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
5 Hb_034243_020 0.068154717 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
6 Hb_002301_080 0.0684534186 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
7 Hb_148909_030 0.0692228499 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
8 Hb_000375_130 0.0720312376 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
9 Hb_010315_090 0.072394724 - - suppressor of ty, putative [Ricinus communis]
10 Hb_002022_070 0.0734906766 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
11 Hb_015475_020 0.0748555819 - - importin beta-1, putative [Ricinus communis]
12 Hb_004629_010 0.0753712617 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
13 Hb_001221_160 0.0756443894 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
14 Hb_004659_080 0.0778194001 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
15 Hb_019153_020 0.0779315261 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
16 Hb_001493_040 0.0781648659 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
17 Hb_006787_060 0.0798494615 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
18 Hb_030627_060 0.0820004054 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
19 Hb_000960_100 0.0833269248 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
20 Hb_002400_240 0.0838087569 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]

Gene co-expression network

sample Hb_133047_010 Hb_133047_010 Hb_111985_080 Hb_111985_080 Hb_133047_010--Hb_111985_080 Hb_004884_010 Hb_004884_010 Hb_133047_010--Hb_004884_010 Hb_002392_030 Hb_002392_030 Hb_133047_010--Hb_002392_030 Hb_034243_020 Hb_034243_020 Hb_133047_010--Hb_034243_020 Hb_002301_080 Hb_002301_080 Hb_133047_010--Hb_002301_080 Hb_148909_030 Hb_148909_030 Hb_133047_010--Hb_148909_030 Hb_111985_080--Hb_148909_030 Hb_111985_080--Hb_002301_080 Hb_030627_060 Hb_030627_060 Hb_111985_080--Hb_030627_060 Hb_004718_010 Hb_004718_010 Hb_111985_080--Hb_004718_010 Hb_064903_010 Hb_064903_010 Hb_111985_080--Hb_064903_010 Hb_004884_010--Hb_034243_020 Hb_010315_090 Hb_010315_090 Hb_004884_010--Hb_010315_090 Hb_002022_070 Hb_002022_070 Hb_004884_010--Hb_002022_070 Hb_004884_010--Hb_148909_030 Hb_004543_030 Hb_004543_030 Hb_004884_010--Hb_004543_030 Hb_002066_080 Hb_002066_080 Hb_002392_030--Hb_002066_080 Hb_004629_010 Hb_004629_010 Hb_002392_030--Hb_004629_010 Hb_002392_030--Hb_148909_030 Hb_004659_080 Hb_004659_080 Hb_002392_030--Hb_004659_080 Hb_000375_130 Hb_000375_130 Hb_002392_030--Hb_000375_130 Hb_034243_020--Hb_004543_030 Hb_001493_040 Hb_001493_040 Hb_034243_020--Hb_001493_040 Hb_007576_120 Hb_007576_120 Hb_034243_020--Hb_007576_120 Hb_034243_020--Hb_010315_090 Hb_116929_010 Hb_116929_010 Hb_002301_080--Hb_116929_010 Hb_003044_020 Hb_003044_020 Hb_002301_080--Hb_003044_020 Hb_117552_010 Hb_117552_010 Hb_002301_080--Hb_117552_010 Hb_002400_240 Hb_002400_240 Hb_002301_080--Hb_002400_240 Hb_000320_200 Hb_000320_200 Hb_002301_080--Hb_000320_200 Hb_005488_150 Hb_005488_150 Hb_148909_030--Hb_005488_150 Hb_148909_030--Hb_116929_010 Hb_000010_360 Hb_000010_360 Hb_148909_030--Hb_000010_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6592 16.2911 6.49209 6.18857 18.8104 16.1533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.01886 3.21689 7.53811 9.22778 9.35743

CAGE analysis