Hb_000010_360

Information

Type -
Description -
Location Contig10: 392467-397220
Sequence    

Annotation

kegg
ID rcu:RCOM_1507660
description o-linked n-acetylglucosamine transferase, ogt, putative
nr
ID XP_012079925.1
description PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
swissprot
ID Q9M8Y0
description Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1
trembl
ID A0A067KGL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11365 PE=4 SV=1
Gene Ontology
ID GO:0016757
description probable udp-n-acetylglucosamine--peptide n-acetylglucosaminyltransferase spindly

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00176: 385976-392064 , PASA_asmbl_00178: 392536-397216 , PASA_asmbl_00179: 392536-397216
cDNA
(Sanger)
(ID:Location)		 047_C13.ab1: 392536-393911

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_360 0.0 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
2 Hb_000406_230 0.0543476815 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
3 Hb_000191_130 0.0560400341 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
4 Hb_028487_010 0.0648456493 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
5 Hb_023344_010 0.065163122 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
6 Hb_000640_310 0.0677340783 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
7 Hb_104061_020 0.0695794026 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
8 Hb_148909_030 0.0698704429 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
9 Hb_003739_030 0.0698919266 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
10 Hb_007558_070 0.0699212205 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
11 Hb_002784_010 0.0709770777 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
12 Hb_001307_080 0.0724211361 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
13 Hb_002422_050 0.0737874141 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
14 Hb_000032_010 0.0740405917 - - crooked neck protein, putative [Ricinus communis]
15 Hb_004429_160 0.0743233223 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
16 Hb_001799_050 0.0743280725 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
17 Hb_000960_050 0.0751070138 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
18 Hb_000307_210 0.0761700282 - - Transportin 1 isoform 1 [Theobroma cacao]
19 Hb_000856_140 0.0773062146 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
20 Hb_004659_080 0.0773834432 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000010_360 Hb_000010_360 Hb_000406_230 Hb_000406_230 Hb_000010_360--Hb_000406_230 Hb_000191_130 Hb_000191_130 Hb_000010_360--Hb_000191_130 Hb_028487_010 Hb_028487_010 Hb_000010_360--Hb_028487_010 Hb_023344_010 Hb_023344_010 Hb_000010_360--Hb_023344_010 Hb_000640_310 Hb_000640_310 Hb_000010_360--Hb_000640_310 Hb_104061_020 Hb_104061_020 Hb_000010_360--Hb_104061_020 Hb_000406_230--Hb_023344_010 Hb_007558_070 Hb_007558_070 Hb_000406_230--Hb_007558_070 Hb_000960_050 Hb_000960_050 Hb_000406_230--Hb_000960_050 Hb_000406_230--Hb_000191_130 Hb_000917_160 Hb_000917_160 Hb_000406_230--Hb_000917_160 Hb_000062_470 Hb_000062_470 Hb_000191_130--Hb_000062_470 Hb_000191_130--Hb_000917_160 Hb_004429_160 Hb_004429_160 Hb_000191_130--Hb_004429_160 Hb_000191_130--Hb_000640_310 Hb_000032_010 Hb_000032_010 Hb_000191_130--Hb_000032_010 Hb_000307_210 Hb_000307_210 Hb_028487_010--Hb_000307_210 Hb_011173_030 Hb_011173_030 Hb_028487_010--Hb_011173_030 Hb_001821_090 Hb_001821_090 Hb_028487_010--Hb_001821_090 Hb_002107_070 Hb_002107_070 Hb_028487_010--Hb_002107_070 Hb_000740_100 Hb_000740_100 Hb_028487_010--Hb_000740_100 Hb_005143_030 Hb_005143_030 Hb_028487_010--Hb_005143_030 Hb_023344_010--Hb_000640_310 Hb_023344_010--Hb_007558_070 Hb_023344_010--Hb_000191_130 Hb_001799_050 Hb_001799_050 Hb_023344_010--Hb_001799_050 Hb_000640_310--Hb_001799_050 Hb_000556_170 Hb_000556_170 Hb_000640_310--Hb_000556_170 Hb_000236_470 Hb_000236_470 Hb_000640_310--Hb_000236_470 Hb_000160_350 Hb_000160_350 Hb_000640_310--Hb_000160_350 Hb_104061_020--Hb_002107_070 Hb_000579_230 Hb_000579_230 Hb_104061_020--Hb_000579_230 Hb_002329_040 Hb_002329_040 Hb_104061_020--Hb_002329_040 Hb_010053_030 Hb_010053_030 Hb_104061_020--Hb_010053_030 Hb_104061_020--Hb_000740_100 Hb_009175_020 Hb_009175_020 Hb_104061_020--Hb_009175_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.227 21.1787 12.0638 7.65728 22.2903 19.8617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.52803 7.87755 6.61534 17.8594 11.2579

CAGE analysis