Hb_000236_470

Information

Type -
Description -
Location Contig236: 366978-374196
Sequence    

Annotation

kegg
ID rcu:RCOM_0522600
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012071059.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
swissprot
ID Q9LVQ5
description Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=3 SV=2
trembl
ID B9S9V6
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0522600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24729: 367518-369481 , PASA_asmbl_24731: 367618-367894 , PASA_asmbl_24732: 367706-369467 , PASA_asmbl_24733: 369744-370154 , PASA_asmbl_24734: 370250-370575 , PASA_asmbl_24735: 370578-374160 , PASA_asmbl_24736: 373434-374078
cDNA
(Sanger)
(ID:Location)		 050_N16.ab1: 372908-374137

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_470 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
2 Hb_001277_020 0.056736097 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
3 Hb_000640_310 0.0575500151 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
4 Hb_002701_150 0.0576448919 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
5 Hb_001047_200 0.0604542765 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
6 Hb_120803_010 0.0617636742 - - PREDICTED: protein kinase and PP2C-like domain-containing protein [Malus domestica]
7 Hb_000556_170 0.0622554948 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
8 Hb_001636_050 0.0623765514 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
9 Hb_140049_040 0.0652098517 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
10 Hb_001021_200 0.0685976953 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
11 Hb_004976_010 0.0704961263 - - hypothetical protein RCOM_1429110 [Ricinus communis]
12 Hb_001430_080 0.0723728619 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
13 Hb_003943_020 0.0737387835 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
14 Hb_007426_060 0.0747049259 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
15 Hb_001534_210 0.0751787418 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
16 Hb_000823_030 0.0758483205 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
17 Hb_001191_120 0.0759194887 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
18 Hb_000523_080 0.0761137544 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
19 Hb_001799_050 0.0773368636 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
20 Hb_007929_080 0.0777497546 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_470 Hb_000236_470 Hb_001277_020 Hb_001277_020 Hb_000236_470--Hb_001277_020 Hb_000640_310 Hb_000640_310 Hb_000236_470--Hb_000640_310 Hb_002701_150 Hb_002701_150 Hb_000236_470--Hb_002701_150 Hb_001047_200 Hb_001047_200 Hb_000236_470--Hb_001047_200 Hb_120803_010 Hb_120803_010 Hb_000236_470--Hb_120803_010 Hb_000556_170 Hb_000556_170 Hb_000236_470--Hb_000556_170 Hb_001430_080 Hb_001430_080 Hb_001277_020--Hb_001430_080 Hb_140049_040 Hb_140049_040 Hb_001277_020--Hb_140049_040 Hb_008147_040 Hb_008147_040 Hb_001277_020--Hb_008147_040 Hb_000099_040 Hb_000099_040 Hb_001277_020--Hb_000099_040 Hb_000011_100 Hb_000011_100 Hb_001277_020--Hb_000011_100 Hb_001799_050 Hb_001799_050 Hb_000640_310--Hb_001799_050 Hb_000640_310--Hb_000556_170 Hb_000191_130 Hb_000191_130 Hb_000640_310--Hb_000191_130 Hb_000160_350 Hb_000160_350 Hb_000640_310--Hb_000160_350 Hb_023344_010 Hb_023344_010 Hb_000640_310--Hb_023344_010 Hb_000836_410 Hb_000836_410 Hb_002701_150--Hb_000836_410 Hb_001636_050 Hb_001636_050 Hb_002701_150--Hb_001636_050 Hb_000679_340 Hb_000679_340 Hb_002701_150--Hb_000679_340 Hb_000230_090 Hb_000230_090 Hb_002701_150--Hb_000230_090 Hb_012565_050 Hb_012565_050 Hb_002701_150--Hb_012565_050 Hb_000577_030 Hb_000577_030 Hb_001047_200--Hb_000577_030 Hb_000823_030 Hb_000823_030 Hb_001047_200--Hb_000823_030 Hb_000184_150 Hb_000184_150 Hb_001047_200--Hb_000184_150 Hb_001021_200 Hb_001021_200 Hb_001047_200--Hb_001021_200 Hb_005542_050 Hb_005542_050 Hb_001047_200--Hb_005542_050 Hb_120803_010--Hb_000556_170 Hb_120803_010--Hb_001047_200 Hb_001191_120 Hb_001191_120 Hb_120803_010--Hb_001191_120 Hb_120803_010--Hb_000640_310 Hb_120803_010--Hb_001277_020 Hb_003633_070 Hb_003633_070 Hb_000556_170--Hb_003633_070 Hb_000556_170--Hb_001799_050 Hb_000556_170--Hb_140049_040 Hb_004480_040 Hb_004480_040 Hb_000556_170--Hb_004480_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.54616 8.18 6.25597 2.83195 7.00089 5.08135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.62314 3.3642 2.82294 5.81551 4.6883

CAGE analysis