Hb_000640_310

Information

Type -
Description -
Location Contig640: 279426-289894
Sequence    

Annotation

kegg
ID rcu:RCOM_1346330
description RNA binding protein, putative
nr
ID KDP28284.1
description hypothetical protein JCGZ_14055 [Jatropha curcas]
swissprot
ID O04425
description Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=1 SV=2
trembl
ID A0A067K906
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14055 PE=4 SV=1
Gene Ontology
ID GO:0097159
description rna acid isoform 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52134: 279846-282252 , PASA_asmbl_52135: 282855-283755 , PASA_asmbl_52136: 282914-283790 , PASA_asmbl_52137: 284253-289668 , PASA_asmbl_52138: 284876-289668 , PASA_asmbl_52139: 285218-285699 , PASA_asmbl_52140: 285852-286068
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_310 0.0 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
2 Hb_001799_050 0.0369412487 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
3 Hb_000556_170 0.0525301074 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
4 Hb_000236_470 0.0575500151 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
5 Hb_000191_130 0.0576859713 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
6 Hb_000160_350 0.060451158 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
7 Hb_023344_010 0.0608700296 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
8 Hb_003633_070 0.061689125 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
9 Hb_140049_040 0.0622557526 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
10 Hb_027760_080 0.0626887643 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000648_080 0.0649109056 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
12 Hb_000010_360 0.0677340783 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
13 Hb_005260_010 0.0683627061 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
14 Hb_000406_230 0.0686687007 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
15 Hb_000664_070 0.0689667017 - - PREDICTED: protein cereblon [Jatropha curcas]
16 Hb_000487_420 0.0692861144 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
17 Hb_007558_070 0.0725469547 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
18 Hb_000264_030 0.072551454 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
19 Hb_001277_020 0.0727531094 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
20 Hb_008147_040 0.0741323788 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000640_310 Hb_000640_310 Hb_001799_050 Hb_001799_050 Hb_000640_310--Hb_001799_050 Hb_000556_170 Hb_000556_170 Hb_000640_310--Hb_000556_170 Hb_000236_470 Hb_000236_470 Hb_000640_310--Hb_000236_470 Hb_000191_130 Hb_000191_130 Hb_000640_310--Hb_000191_130 Hb_000160_350 Hb_000160_350 Hb_000640_310--Hb_000160_350 Hb_023344_010 Hb_023344_010 Hb_000640_310--Hb_023344_010 Hb_003633_070 Hb_003633_070 Hb_001799_050--Hb_003633_070 Hb_000264_030 Hb_000264_030 Hb_001799_050--Hb_000264_030 Hb_001799_050--Hb_000556_170 Hb_001799_050--Hb_000160_350 Hb_001143_250 Hb_001143_250 Hb_001799_050--Hb_001143_250 Hb_000556_170--Hb_000236_470 Hb_000556_170--Hb_003633_070 Hb_140049_040 Hb_140049_040 Hb_000556_170--Hb_140049_040 Hb_004480_040 Hb_004480_040 Hb_000556_170--Hb_004480_040 Hb_001277_020 Hb_001277_020 Hb_000236_470--Hb_001277_020 Hb_002701_150 Hb_002701_150 Hb_000236_470--Hb_002701_150 Hb_001047_200 Hb_001047_200 Hb_000236_470--Hb_001047_200 Hb_120803_010 Hb_120803_010 Hb_000236_470--Hb_120803_010 Hb_000062_470 Hb_000062_470 Hb_000191_130--Hb_000062_470 Hb_000917_160 Hb_000917_160 Hb_000191_130--Hb_000917_160 Hb_004429_160 Hb_004429_160 Hb_000191_130--Hb_004429_160 Hb_000010_360 Hb_000010_360 Hb_000191_130--Hb_000010_360 Hb_000032_010 Hb_000032_010 Hb_000191_130--Hb_000032_010 Hb_005965_030 Hb_005965_030 Hb_000160_350--Hb_005965_030 Hb_079526_030 Hb_079526_030 Hb_000160_350--Hb_079526_030 Hb_000771_180 Hb_000771_180 Hb_000160_350--Hb_000771_180 Hb_022256_060 Hb_022256_060 Hb_000160_350--Hb_022256_060 Hb_000406_230 Hb_000406_230 Hb_023344_010--Hb_000406_230 Hb_007558_070 Hb_007558_070 Hb_023344_010--Hb_007558_070 Hb_023344_010--Hb_000010_360 Hb_023344_010--Hb_000191_130 Hb_023344_010--Hb_001799_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1181 12.6157 7.99754 4.66608 11.2838 8.48177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.67094 5.39266 3.72882 8.40346 6.0791

CAGE analysis