Hb_004429_160

Information

Type -
Description -
Location Contig4429: 124442-136434
Sequence    

Annotation

kegg
ID rcu:RCOM_1620250
description serine/threonine protein kinase, putative (EC:2.7.12.2)
nr
ID XP_012067803.1
description PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
swissprot
ID Q86IX1
description Serine/threonine-protein kinase dst1 OS=Dictyostelium discoideum GN=dst1 PE=3 SV=1
trembl
ID A0A067KYQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15728 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42748: 124552-136026 , PASA_asmbl_42749: 131470-131655 , PASA_asmbl_42750: 135607-135816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004429_160 0.0 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
2 Hb_000191_130 0.0492670812 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
3 Hb_003040_020 0.0497322019 - - PREDICTED: protein cereblon [Jatropha curcas]
4 Hb_000032_010 0.0576556382 - - crooked neck protein, putative [Ricinus communis]
5 Hb_001307_080 0.062274213 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
6 Hb_000062_470 0.0650432236 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
7 Hb_000935_090 0.0666117861 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
8 Hb_000856_140 0.0672710982 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
9 Hb_007558_120 0.0688665609 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
10 Hb_010315_090 0.069628875 - - suppressor of ty, putative [Ricinus communis]
11 Hb_000796_190 0.0721101258 - - hypothetical protein F383_31148 [Gossypium arboreum]
12 Hb_001417_050 0.0730826266 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
13 Hb_000917_160 0.0738414058 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
14 Hb_000010_360 0.0743233223 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
15 Hb_005539_190 0.0748284897 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
16 Hb_023344_010 0.0748569936 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
17 Hb_019153_020 0.0756913763 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
18 Hb_000329_130 0.0764166065 - - beta-tubulin cofactor d, putative [Ricinus communis]
19 Hb_000753_100 0.0769386927 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
20 Hb_028872_120 0.0769579278 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]

Gene co-expression network

sample Hb_004429_160 Hb_004429_160 Hb_000191_130 Hb_000191_130 Hb_004429_160--Hb_000191_130 Hb_003040_020 Hb_003040_020 Hb_004429_160--Hb_003040_020 Hb_000032_010 Hb_000032_010 Hb_004429_160--Hb_000032_010 Hb_001307_080 Hb_001307_080 Hb_004429_160--Hb_001307_080 Hb_000062_470 Hb_000062_470 Hb_004429_160--Hb_000062_470 Hb_000935_090 Hb_000935_090 Hb_004429_160--Hb_000935_090 Hb_000191_130--Hb_000062_470 Hb_000917_160 Hb_000917_160 Hb_000191_130--Hb_000917_160 Hb_000010_360 Hb_000010_360 Hb_000191_130--Hb_000010_360 Hb_000640_310 Hb_000640_310 Hb_000191_130--Hb_000640_310 Hb_000191_130--Hb_000032_010 Hb_003040_020--Hb_000032_010 Hb_005539_190 Hb_005539_190 Hb_003040_020--Hb_005539_190 Hb_003040_020--Hb_000191_130 Hb_019153_020 Hb_019153_020 Hb_003040_020--Hb_019153_020 Hb_000856_140 Hb_000856_140 Hb_003040_020--Hb_000856_140 Hb_000032_010--Hb_019153_020 Hb_000753_100 Hb_000753_100 Hb_000032_010--Hb_000753_100 Hb_000032_010--Hb_000856_140 Hb_001307_080--Hb_000191_130 Hb_006658_040 Hb_006658_040 Hb_001307_080--Hb_006658_040 Hb_001307_080--Hb_000010_360 Hb_004209_020 Hb_004209_020 Hb_001307_080--Hb_004209_020 Hb_001307_080--Hb_003040_020 Hb_000062_470--Hb_000917_160 Hb_010417_060 Hb_010417_060 Hb_000062_470--Hb_010417_060 Hb_000661_200 Hb_000661_200 Hb_000062_470--Hb_000661_200 Hb_007813_030 Hb_007813_030 Hb_000062_470--Hb_007813_030 Hb_001178_150 Hb_001178_150 Hb_000935_090--Hb_001178_150 Hb_001493_040 Hb_001493_040 Hb_000935_090--Hb_001493_040 Hb_001417_050 Hb_001417_050 Hb_000935_090--Hb_001417_050 Hb_000796_190 Hb_000796_190 Hb_000935_090--Hb_000796_190 Hb_000025_650 Hb_000025_650 Hb_000935_090--Hb_000025_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.8308 28.3089 17.1044 13.002 35.035 26.7888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4249 7.70013 8.65243 17.3006 15.1862

CAGE analysis