Hb_000753_100

Information

Type transcription factor
Description TF Family: PHD
Location Contig753: 87125-90665
Sequence    

Annotation

kegg
ID rcu:RCOM_1467100
description splicing factor, arginine/serine-rich 2,rnap interacting protein, putative
nr
ID XP_012080448.1
description PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11771 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56900: 87199-90598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000753_100 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
2 Hb_000032_010 0.0582154552 - - crooked neck protein, putative [Ricinus communis]
3 Hb_003540_160 0.0665667369 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
4 Hb_003040_020 0.0713858984 - - PREDICTED: protein cereblon [Jatropha curcas]
5 Hb_001117_190 0.0736294854 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
6 Hb_140049_020 0.0747632219 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
7 Hb_005188_060 0.0768688438 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
8 Hb_019153_020 0.0768706704 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
9 Hb_004429_160 0.0769386927 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
10 Hb_005539_190 0.0778058427 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
11 Hb_001231_030 0.0781577691 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
12 Hb_002997_160 0.0785023025 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
13 Hb_007229_040 0.0787023619 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
14 Hb_004635_050 0.0794190685 - - nucleolar phosphoprotein, putative [Ricinus communis]
15 Hb_003929_140 0.079625312 - - DNA binding protein, putative [Ricinus communis]
16 Hb_003858_090 0.0802393622 - - Filamin-A-interacting protein, putative [Ricinus communis]
17 Hb_004629_010 0.0813341082 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
18 Hb_001141_370 0.0816748063 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
19 Hb_000317_150 0.0850569836 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
20 Hb_001221_160 0.0852749865 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]

Gene co-expression network

sample Hb_000753_100 Hb_000753_100 Hb_000032_010 Hb_000032_010 Hb_000753_100--Hb_000032_010 Hb_003540_160 Hb_003540_160 Hb_000753_100--Hb_003540_160 Hb_003040_020 Hb_003040_020 Hb_000753_100--Hb_003040_020 Hb_001117_190 Hb_001117_190 Hb_000753_100--Hb_001117_190 Hb_140049_020 Hb_140049_020 Hb_000753_100--Hb_140049_020 Hb_005188_060 Hb_005188_060 Hb_000753_100--Hb_005188_060 Hb_019153_020 Hb_019153_020 Hb_000032_010--Hb_019153_020 Hb_000032_010--Hb_003040_020 Hb_004429_160 Hb_004429_160 Hb_000032_010--Hb_004429_160 Hb_000191_130 Hb_000191_130 Hb_000032_010--Hb_000191_130 Hb_000856_140 Hb_000856_140 Hb_000032_010--Hb_000856_140 Hb_000317_150 Hb_000317_150 Hb_003540_160--Hb_000317_150 Hb_003540_160--Hb_001117_190 Hb_005539_190 Hb_005539_190 Hb_003540_160--Hb_005539_190 Hb_003540_160--Hb_140049_020 Hb_007943_120 Hb_007943_120 Hb_003540_160--Hb_007943_120 Hb_003040_020--Hb_004429_160 Hb_003040_020--Hb_005539_190 Hb_003040_020--Hb_000191_130 Hb_003040_020--Hb_019153_020 Hb_003040_020--Hb_000856_140 Hb_007229_040 Hb_007229_040 Hb_001117_190--Hb_007229_040 Hb_001117_190--Hb_000317_150 Hb_001117_190--Hb_005539_190 Hb_001117_190--Hb_005188_060 Hb_000313_340 Hb_000313_340 Hb_140049_020--Hb_000313_340 Hb_140049_020--Hb_019153_020 Hb_140049_020--Hb_005539_190 Hb_000329_130 Hb_000329_130 Hb_140049_020--Hb_000329_130 Hb_140049_020--Hb_007229_040 Hb_000363_130 Hb_000363_130 Hb_140049_020--Hb_000363_130 Hb_005188_060--Hb_007943_120 Hb_005883_010 Hb_005883_010 Hb_005188_060--Hb_005883_010 Hb_003680_230 Hb_003680_230 Hb_005188_060--Hb_003680_230 Hb_000140_330 Hb_000140_330 Hb_005188_060--Hb_000140_330 Hb_005188_060--Hb_007229_040 Hb_004635_050 Hb_004635_050 Hb_005188_060--Hb_004635_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4372 21.2992 9.94929 5.61962 18.5825 14.4685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.16518 3.74606 6.47682 8.15331 6.90913

CAGE analysis