Hb_007229_040

Information

Type -
Description -
Location Contig7229: 20512-33787
Sequence    

Annotation

kegg
ID rcu:RCOM_1608630
description ubiquitin-protein ligase, putative
nr
ID XP_012083660.1
description PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
swissprot
ID O22161
description Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1
trembl
ID A0A067K975
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14596 PE=4 SV=1
Gene Ontology
ID GO:0016874
description protein arabidillo 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55737: 20659-33782 , PASA_asmbl_55738: 27126-27736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007229_040 0.0 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
2 Hb_140049_020 0.0606442662 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
3 Hb_001117_190 0.0616733438 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
4 Hb_005883_010 0.0698241924 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000320_380 0.0708658132 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
6 Hb_005188_060 0.072275651 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
7 Hb_007943_120 0.0723921902 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
8 Hb_001616_050 0.073537541 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
9 Hb_008554_120 0.0781241567 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
10 Hb_000753_100 0.0787023619 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
11 Hb_000300_360 0.07880471 - - PREDICTED: exosome component 10 [Jatropha curcas]
12 Hb_003540_160 0.0803227294 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
13 Hb_000313_340 0.0817855861 - - DNA repair protein xp-E, putative [Ricinus communis]
14 Hb_019153_020 0.0818839581 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
15 Hb_001946_300 0.0840457911 - - PREDICTED: F-box protein At-B [Jatropha curcas]
16 Hb_005539_190 0.0840594332 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
17 Hb_015026_050 0.0845851423 - - XPA-binding protein, putative [Ricinus communis]
18 Hb_033883_060 0.085196512 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
19 Hb_147737_010 0.0852664189 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
20 Hb_004635_050 0.0856312671 - - nucleolar phosphoprotein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007229_040 Hb_007229_040 Hb_140049_020 Hb_140049_020 Hb_007229_040--Hb_140049_020 Hb_001117_190 Hb_001117_190 Hb_007229_040--Hb_001117_190 Hb_005883_010 Hb_005883_010 Hb_007229_040--Hb_005883_010 Hb_000320_380 Hb_000320_380 Hb_007229_040--Hb_000320_380 Hb_005188_060 Hb_005188_060 Hb_007229_040--Hb_005188_060 Hb_007943_120 Hb_007943_120 Hb_007229_040--Hb_007943_120 Hb_000313_340 Hb_000313_340 Hb_140049_020--Hb_000313_340 Hb_019153_020 Hb_019153_020 Hb_140049_020--Hb_019153_020 Hb_005539_190 Hb_005539_190 Hb_140049_020--Hb_005539_190 Hb_000329_130 Hb_000329_130 Hb_140049_020--Hb_000329_130 Hb_000363_130 Hb_000363_130 Hb_140049_020--Hb_000363_130 Hb_003540_160 Hb_003540_160 Hb_001117_190--Hb_003540_160 Hb_000317_150 Hb_000317_150 Hb_001117_190--Hb_000317_150 Hb_000753_100 Hb_000753_100 Hb_001117_190--Hb_000753_100 Hb_001117_190--Hb_005539_190 Hb_001117_190--Hb_005188_060 Hb_005883_010--Hb_007943_120 Hb_005883_010--Hb_005188_060 Hb_000283_130 Hb_000283_130 Hb_005883_010--Hb_000283_130 Hb_010738_010 Hb_010738_010 Hb_005883_010--Hb_010738_010 Hb_000140_330 Hb_000140_330 Hb_005883_010--Hb_000140_330 Hb_015026_050 Hb_015026_050 Hb_000320_380--Hb_015026_050 Hb_002221_050 Hb_002221_050 Hb_000320_380--Hb_002221_050 Hb_000320_380--Hb_019153_020 Hb_007885_070 Hb_007885_070 Hb_000320_380--Hb_007885_070 Hb_000320_380--Hb_140049_020 Hb_000574_440 Hb_000574_440 Hb_000320_380--Hb_000574_440 Hb_005188_060--Hb_007943_120 Hb_003680_230 Hb_003680_230 Hb_005188_060--Hb_003680_230 Hb_005188_060--Hb_000140_330 Hb_004635_050 Hb_004635_050 Hb_005188_060--Hb_004635_050 Hb_028872_120 Hb_028872_120 Hb_007943_120--Hb_028872_120 Hb_001771_120 Hb_001771_120 Hb_007943_120--Hb_001771_120 Hb_007943_120--Hb_004635_050 Hb_007943_120--Hb_003680_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.538 51.2863 32.2594 10.9559 56.7033 54.8825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.6119 13.7574 25.991 23.9943 15.9581

CAGE analysis