Hb_000140_330

Information

Type -
Description -
Location Contig140: 329679-332057
Sequence    

Annotation

kegg
ID rcu:RCOM_1617150
description hypothetical protein
nr
ID XP_012083286.1
description PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8D7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14316 PE=4 SV=1
Gene Ontology
ID GO:0009627
description duf2358 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10853: 329754-332056 , PASA_asmbl_10854: 330325-330774 , PASA_asmbl_10855: 330960-331355
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_330 0.0 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
2 Hb_005883_010 0.0668166041 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005188_060 0.0702311308 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
4 Hb_007943_120 0.0728714097 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
5 Hb_000406_240 0.0738574557 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
6 Hb_006452_160 0.0753212623 - - structural constituent of ribosome, putative [Ricinus communis]
7 Hb_000368_020 0.0814118341 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
8 Hb_010738_010 0.0872176356 - - PREDICTED: B2 protein [Jatropha curcas]
9 Hb_000283_130 0.0875626218 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
10 Hb_000227_250 0.0888504603 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
11 Hb_000359_330 0.0904887494 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001486_080 0.0920914176 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
13 Hb_003142_070 0.092404171 - - hypothetical protein F383_14657 [Gossypium arboreum]
14 Hb_007951_100 0.0927036534 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_000787_170 0.0928328932 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
16 Hb_000939_060 0.0938848102 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
17 Hb_000261_220 0.0945860612 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
18 Hb_000261_250 0.0946578446 - - elongation factor 1-alpha [Lepidium sativum]
19 Hb_000181_120 0.0946781641 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
20 Hb_002045_150 0.0950404478 - - histone acetyltransferase gcn5, putative [Ricinus communis]

Gene co-expression network

sample Hb_000140_330 Hb_000140_330 Hb_005883_010 Hb_005883_010 Hb_000140_330--Hb_005883_010 Hb_005188_060 Hb_005188_060 Hb_000140_330--Hb_005188_060 Hb_007943_120 Hb_007943_120 Hb_000140_330--Hb_007943_120 Hb_000406_240 Hb_000406_240 Hb_000140_330--Hb_000406_240 Hb_006452_160 Hb_006452_160 Hb_000140_330--Hb_006452_160 Hb_000368_020 Hb_000368_020 Hb_000140_330--Hb_000368_020 Hb_005883_010--Hb_007943_120 Hb_005883_010--Hb_005188_060 Hb_000283_130 Hb_000283_130 Hb_005883_010--Hb_000283_130 Hb_010738_010 Hb_010738_010 Hb_005883_010--Hb_010738_010 Hb_007229_040 Hb_007229_040 Hb_005883_010--Hb_007229_040 Hb_005188_060--Hb_007943_120 Hb_003680_230 Hb_003680_230 Hb_005188_060--Hb_003680_230 Hb_005188_060--Hb_007229_040 Hb_004635_050 Hb_004635_050 Hb_005188_060--Hb_004635_050 Hb_028872_120 Hb_028872_120 Hb_007943_120--Hb_028872_120 Hb_001771_120 Hb_001771_120 Hb_007943_120--Hb_001771_120 Hb_007943_120--Hb_004635_050 Hb_007943_120--Hb_003680_230 Hb_007982_070 Hb_007982_070 Hb_000406_240--Hb_007982_070 Hb_017075_030 Hb_017075_030 Hb_000406_240--Hb_017075_030 Hb_001486_080 Hb_001486_080 Hb_000406_240--Hb_001486_080 Hb_000406_240--Hb_005883_010 Hb_000406_240--Hb_004635_050 Hb_002739_130 Hb_002739_130 Hb_006452_160--Hb_002739_130 Hb_000563_330 Hb_000563_330 Hb_006452_160--Hb_000563_330 Hb_002045_150 Hb_002045_150 Hb_006452_160--Hb_002045_150 Hb_006452_160--Hb_005188_060 Hb_016734_090 Hb_016734_090 Hb_006452_160--Hb_016734_090 Hb_000794_050 Hb_000794_050 Hb_000368_020--Hb_000794_050 Hb_003467_010 Hb_003467_010 Hb_000368_020--Hb_003467_010 Hb_006960_050 Hb_006960_050 Hb_000368_020--Hb_006960_050 Hb_106552_050 Hb_106552_050 Hb_000368_020--Hb_106552_050 Hb_000926_310 Hb_000926_310 Hb_000368_020--Hb_000926_310 Hb_006824_060 Hb_006824_060 Hb_000368_020--Hb_006824_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
233.241 168.775 139.242 49.8211 191.948 162.089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.6205 94.9731 71.7008 46.6817 56.9367

CAGE analysis