Hb_006960_050

Information

Type -
Description -
Location Contig6960: 31525-34971
Sequence    

Annotation

kegg
ID tcc:TCM_007137
description hypothetical protein
nr
ID XP_012075843.1
description PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
swissprot
ID Q2KIT1
description PRKR-interacting protein 1 OS=Bos taurus GN=PRKRIP1 PE=2 SV=1
trembl
ID A0A067LM79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54618: 31511-34968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006960_050 0.0 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
2 Hb_000649_070 0.0553825187 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
3 Hb_004055_150 0.0573152322 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004785_100 0.0590131738 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006620_020 0.0617772492 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
6 Hb_020367_050 0.0663716083 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
7 Hb_002686_250 0.0665902943 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
8 Hb_000260_100 0.0675466119 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000853_230 0.0677846044 - - syntaxin, putative [Ricinus communis]
10 Hb_007007_060 0.0680058392 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
11 Hb_003029_030 0.0680390269 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
12 Hb_021422_010 0.0692913416 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
13 Hb_033720_010 0.069490303 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
14 Hb_001329_130 0.0703509673 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001418_040 0.0707886031 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
16 Hb_003018_060 0.0712788191 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
17 Hb_012753_170 0.0726268323 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
18 Hb_000959_270 0.0729857954 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
19 Hb_000368_020 0.0735116572 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
20 Hb_032208_040 0.0738908623 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]

Gene co-expression network

sample Hb_006960_050 Hb_006960_050 Hb_000649_070 Hb_000649_070 Hb_006960_050--Hb_000649_070 Hb_004055_150 Hb_004055_150 Hb_006960_050--Hb_004055_150 Hb_004785_100 Hb_004785_100 Hb_006960_050--Hb_004785_100 Hb_006620_020 Hb_006620_020 Hb_006960_050--Hb_006620_020 Hb_020367_050 Hb_020367_050 Hb_006960_050--Hb_020367_050 Hb_002686_250 Hb_002686_250 Hb_006960_050--Hb_002686_250 Hb_001329_130 Hb_001329_130 Hb_000649_070--Hb_001329_130 Hb_033153_070 Hb_033153_070 Hb_000649_070--Hb_033153_070 Hb_079526_030 Hb_079526_030 Hb_000649_070--Hb_079526_030 Hb_000334_270 Hb_000334_270 Hb_000649_070--Hb_000334_270 Hb_000649_070--Hb_020367_050 Hb_001926_030 Hb_001926_030 Hb_004055_150--Hb_001926_030 Hb_004055_150--Hb_002686_250 Hb_000853_230 Hb_000853_230 Hb_004055_150--Hb_000853_230 Hb_004055_150--Hb_006620_020 Hb_005993_050 Hb_005993_050 Hb_004055_150--Hb_005993_050 Hb_131646_010 Hb_131646_010 Hb_004785_100--Hb_131646_010 Hb_002835_230 Hb_002835_230 Hb_004785_100--Hb_002835_230 Hb_004785_100--Hb_002686_250 Hb_001821_160 Hb_001821_160 Hb_004785_100--Hb_001821_160 Hb_002078_110 Hb_002078_110 Hb_004785_100--Hb_002078_110 Hb_006620_020--Hb_000853_230 Hb_000879_200 Hb_000879_200 Hb_006620_020--Hb_000879_200 Hb_006620_020--Hb_001926_030 Hb_054865_100 Hb_054865_100 Hb_006620_020--Hb_054865_100 Hb_000174_110 Hb_000174_110 Hb_006620_020--Hb_000174_110 Hb_032208_040 Hb_032208_040 Hb_020367_050--Hb_032208_040 Hb_020367_050--Hb_001329_130 Hb_005288_150 Hb_005288_150 Hb_020367_050--Hb_005288_150 Hb_000926_310 Hb_000926_310 Hb_020367_050--Hb_000926_310 Hb_007982_080 Hb_007982_080 Hb_020367_050--Hb_007982_080 Hb_002686_250--Hb_131646_010 Hb_003029_030 Hb_003029_030 Hb_002686_250--Hb_003029_030 Hb_002686_250--Hb_001926_030 Hb_002686_250--Hb_002078_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.2321 23.2651 30.2905 18.9947 40.947 28.9048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.0016 24.3859 16.5819 16.0546 17.0478

CAGE analysis