Hb_033153_070

Information

Type -
Description -
Location Contig33153: 47674-51048
Sequence    

Annotation

kegg
ID pop:POPTR_0004s05040g
description POPTRDRAFT_713896; hypothetical protein
nr
ID XP_012091692.1
description PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JE38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21499 PE=4 SV=1
Gene Ontology
ID GO:0009220
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34876: 49496-50044 , PASA_asmbl_34877: 50119-51001
cDNA
(Sanger)
(ID:Location)		 001_K15r.ab1: 45177-47202

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033153_070 0.0 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
2 Hb_010068_040 0.06004447 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
3 Hb_000334_270 0.064889978 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
4 Hb_000649_070 0.0663383879 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
5 Hb_033720_010 0.0710054737 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
6 Hb_002175_030 0.0719334581 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
7 Hb_000959_270 0.0725387707 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
8 Hb_023386_020 0.0739368509 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
9 Hb_000926_190 0.0780768248 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
10 Hb_001586_040 0.0813470217 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
11 Hb_079526_030 0.0818980667 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
12 Hb_006960_050 0.0830965133 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
13 Hb_000179_030 0.0833441661 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
14 Hb_001433_070 0.0848246541 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
15 Hb_120410_010 0.0853817769 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
16 Hb_003849_060 0.0856936891 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
17 Hb_000732_120 0.0869437039 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
18 Hb_022256_060 0.087405881 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
19 Hb_004100_080 0.0875918 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000093_160 0.0881704012 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_033153_070 Hb_033153_070 Hb_010068_040 Hb_010068_040 Hb_033153_070--Hb_010068_040 Hb_000334_270 Hb_000334_270 Hb_033153_070--Hb_000334_270 Hb_000649_070 Hb_000649_070 Hb_033153_070--Hb_000649_070 Hb_033720_010 Hb_033720_010 Hb_033153_070--Hb_033720_010 Hb_002175_030 Hb_002175_030 Hb_033153_070--Hb_002175_030 Hb_000959_270 Hb_000959_270 Hb_033153_070--Hb_000959_270 Hb_000174_110 Hb_000174_110 Hb_010068_040--Hb_000174_110 Hb_010068_040--Hb_000334_270 Hb_010068_040--Hb_002175_030 Hb_003029_030 Hb_003029_030 Hb_010068_040--Hb_003029_030 Hb_001433_070 Hb_001433_070 Hb_010068_040--Hb_001433_070 Hb_000926_190 Hb_000926_190 Hb_000334_270--Hb_000926_190 Hb_003849_060 Hb_003849_060 Hb_000334_270--Hb_003849_060 Hb_006355_010 Hb_006355_010 Hb_000334_270--Hb_006355_010 Hb_000334_270--Hb_002175_030 Hb_006960_050 Hb_006960_050 Hb_000649_070--Hb_006960_050 Hb_001329_130 Hb_001329_130 Hb_000649_070--Hb_001329_130 Hb_079526_030 Hb_079526_030 Hb_000649_070--Hb_079526_030 Hb_000649_070--Hb_000334_270 Hb_020367_050 Hb_020367_050 Hb_000649_070--Hb_020367_050 Hb_023386_020 Hb_023386_020 Hb_033720_010--Hb_023386_020 Hb_000853_230 Hb_000853_230 Hb_033720_010--Hb_000853_230 Hb_000879_200 Hb_000879_200 Hb_033720_010--Hb_000879_200 Hb_002686_250 Hb_002686_250 Hb_033720_010--Hb_002686_250 Hb_000794_050 Hb_000794_050 Hb_033720_010--Hb_000794_050 Hb_006620_020 Hb_006620_020 Hb_033720_010--Hb_006620_020 Hb_002175_030--Hb_001433_070 Hb_156973_010 Hb_156973_010 Hb_002175_030--Hb_156973_010 Hb_002175_030--Hb_000853_230 Hb_001089_110 Hb_001089_110 Hb_002175_030--Hb_001089_110 Hb_002175_030--Hb_006620_020 Hb_000732_120 Hb_000732_120 Hb_000959_270--Hb_000732_120 Hb_000959_270--Hb_006960_050 Hb_000785_030 Hb_000785_030 Hb_000959_270--Hb_000785_030 Hb_008511_030 Hb_008511_030 Hb_000959_270--Hb_008511_030 Hb_004631_180 Hb_004631_180 Hb_000959_270--Hb_004631_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.37905 2.58008 2.75019 1.71942 3.57119 4.003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.15242 3.40718 1.2956 1.54983 2.03782

CAGE analysis