Hb_001329_130

Information

Type -
Description -
Location Contig1329: 84780-87759
Sequence    

Annotation

kegg
ID rcu:RCOM_1344230
description hypothetical protein
nr
ID XP_002515211.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9NUP7
description tRNA:m(4)X modification enzyme TRM13 homolog OS=Homo sapiens GN=TRMT13 PE=1 SV=2
trembl
ID B9RN72
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1344230 PE=4 SV=1
Gene Ontology
ID GO:0008168
description trna:m x modification enzyme trm13 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09394: 85072-86595 , PASA_asmbl_09395: 86644-87203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000260_100 0.0619274548 - - conserved hypothetical protein [Ricinus communis]
3 Hb_020367_050 0.0631354458 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
4 Hb_000649_070 0.0638336981 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
5 Hb_000236_240 0.0655771937 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
6 Hb_005288_150 0.0700577388 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
7 Hb_006960_050 0.0703509673 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
8 Hb_000174_110 0.0713750112 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
9 Hb_003687_230 0.0740538606 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
10 Hb_003029_030 0.0745433094 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
11 Hb_002639_150 0.0768882764 - - -
12 Hb_002918_030 0.0790410798 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
13 Hb_000926_310 0.0794763856 - - uncharacterized protein LOC100500241 [Glycine max]
14 Hb_001586_040 0.0804993282 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
15 Hb_000836_170 0.0821352764 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
16 Hb_006620_020 0.0824301876 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
17 Hb_000808_250 0.0831928369 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
18 Hb_003020_010 0.0856185442 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
19 Hb_005656_210 0.0857370029 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
20 Hb_004093_090 0.0860874871 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]

Gene co-expression network

sample Hb_001329_130 Hb_001329_130 Hb_000260_100 Hb_000260_100 Hb_001329_130--Hb_000260_100 Hb_020367_050 Hb_020367_050 Hb_001329_130--Hb_020367_050 Hb_000649_070 Hb_000649_070 Hb_001329_130--Hb_000649_070 Hb_000236_240 Hb_000236_240 Hb_001329_130--Hb_000236_240 Hb_005288_150 Hb_005288_150 Hb_001329_130--Hb_005288_150 Hb_006960_050 Hb_006960_050 Hb_001329_130--Hb_006960_050 Hb_000260_100--Hb_005288_150 Hb_002997_080 Hb_002997_080 Hb_000260_100--Hb_002997_080 Hb_000260_100--Hb_000236_240 Hb_000230_560 Hb_000230_560 Hb_000260_100--Hb_000230_560 Hb_007007_060 Hb_007007_060 Hb_000260_100--Hb_007007_060 Hb_032208_040 Hb_032208_040 Hb_020367_050--Hb_032208_040 Hb_020367_050--Hb_005288_150 Hb_000926_310 Hb_000926_310 Hb_020367_050--Hb_000926_310 Hb_020367_050--Hb_006960_050 Hb_007982_080 Hb_007982_080 Hb_020367_050--Hb_007982_080 Hb_000649_070--Hb_006960_050 Hb_033153_070 Hb_033153_070 Hb_000649_070--Hb_033153_070 Hb_079526_030 Hb_079526_030 Hb_000649_070--Hb_079526_030 Hb_000334_270 Hb_000334_270 Hb_000649_070--Hb_000334_270 Hb_000649_070--Hb_020367_050 Hb_000236_240--Hb_002997_080 Hb_000883_020 Hb_000883_020 Hb_000236_240--Hb_000883_020 Hb_000866_010 Hb_000866_010 Hb_000236_240--Hb_000866_010 Hb_009421_020 Hb_009421_020 Hb_000236_240--Hb_009421_020 Hb_000141_250 Hb_000141_250 Hb_005288_150--Hb_000141_250 Hb_005288_150--Hb_002997_080 Hb_002639_150 Hb_002639_150 Hb_005288_150--Hb_002639_150 Hb_004055_150 Hb_004055_150 Hb_006960_050--Hb_004055_150 Hb_004785_100 Hb_004785_100 Hb_006960_050--Hb_004785_100 Hb_006620_020 Hb_006620_020 Hb_006960_050--Hb_006620_020 Hb_002686_250 Hb_002686_250 Hb_006960_050--Hb_002686_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4449 6.35902 13.2409 5.4718 16.0977 10.5608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7587 11.2315 6.49887 5.62221 5.84039

CAGE analysis