Hb_002997_080

Information

Type -
Description -
Location Contig2997: 69264-73484
Sequence    

Annotation

kegg
ID rcu:RCOM_0216620
description hypothetical protein
nr
ID XP_012068508.1
description PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
swissprot
ID P73555
description Uncharacterized membrane protein sll0875 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0875 PE=3 SV=1
trembl
ID A0A067KXZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03564 PE=4 SV=1
Gene Ontology
ID GO:0016021
description membrane protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31297: 67759-68348 , PASA_asmbl_31298: 69258-73435 , PASA_asmbl_31299: 69730-73459
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002997_080 0.0 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
2 Hb_000230_560 0.0518769738 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
3 Hb_000260_100 0.0523744826 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000883_020 0.0527395029 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
5 Hb_008511_130 0.0555363019 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
6 Hb_032986_010 0.0574557164 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
7 Hb_004007_220 0.0593934993 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
8 Hb_009545_080 0.0601529595 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
9 Hb_004109_280 0.061607001 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
10 Hb_000141_250 0.0616382125 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
11 Hb_005288_150 0.0673663899 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
12 Hb_000236_240 0.0718873562 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
13 Hb_009646_030 0.0724690303 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003813_040 0.0746999638 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
15 Hb_002272_130 0.0764883058 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
16 Hb_001141_020 0.0767751483 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
17 Hb_001001_080 0.0774485556 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
18 Hb_007007_060 0.0783026736 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
19 Hb_001047_220 0.0786170193 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
20 Hb_000205_190 0.078916925 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002997_080 Hb_002997_080 Hb_000230_560 Hb_000230_560 Hb_002997_080--Hb_000230_560 Hb_000260_100 Hb_000260_100 Hb_002997_080--Hb_000260_100 Hb_000883_020 Hb_000883_020 Hb_002997_080--Hb_000883_020 Hb_008511_130 Hb_008511_130 Hb_002997_080--Hb_008511_130 Hb_032986_010 Hb_032986_010 Hb_002997_080--Hb_032986_010 Hb_004007_220 Hb_004007_220 Hb_002997_080--Hb_004007_220 Hb_003665_060 Hb_003665_060 Hb_000230_560--Hb_003665_060 Hb_000141_250 Hb_000141_250 Hb_000230_560--Hb_000141_250 Hb_003030_070 Hb_003030_070 Hb_000230_560--Hb_003030_070 Hb_007075_040 Hb_007075_040 Hb_000230_560--Hb_007075_040 Hb_000230_560--Hb_000883_020 Hb_005288_150 Hb_005288_150 Hb_000260_100--Hb_005288_150 Hb_000236_240 Hb_000236_240 Hb_000260_100--Hb_000236_240 Hb_001329_130 Hb_001329_130 Hb_000260_100--Hb_001329_130 Hb_000260_100--Hb_000230_560 Hb_007007_060 Hb_007007_060 Hb_000260_100--Hb_007007_060 Hb_009545_080 Hb_009545_080 Hb_000883_020--Hb_009545_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350 Hb_008511_130--Hb_000141_250 Hb_008511_130--Hb_000230_560 Hb_000390_170 Hb_000390_170 Hb_008511_130--Hb_000390_170 Hb_000618_040 Hb_000618_040 Hb_008511_130--Hb_000618_040 Hb_000094_300 Hb_000094_300 Hb_008511_130--Hb_000094_300 Hb_000317_470 Hb_000317_470 Hb_032986_010--Hb_000317_470 Hb_032986_010--Hb_009545_080 Hb_002272_130 Hb_002272_130 Hb_032986_010--Hb_002272_130 Hb_023344_120 Hb_023344_120 Hb_032986_010--Hb_023344_120 Hb_001269_230 Hb_001269_230 Hb_004007_220--Hb_001269_230 Hb_027472_120 Hb_027472_120 Hb_004007_220--Hb_027472_120 Hb_001047_220 Hb_001047_220 Hb_004007_220--Hb_001047_220 Hb_009646_030 Hb_009646_030 Hb_004007_220--Hb_009646_030 Hb_002684_040 Hb_002684_040 Hb_004007_220--Hb_002684_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.812 9.78064 20.2269 13.885 21.7757 20.9874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0239 14.0726 16.5962 10.7186 14.3988

CAGE analysis