Hb_000141_250

Information

Type -
Description -
Location Contig141: 355401-364868
Sequence    

Annotation

kegg
ID pop:POPTR_0001s00390g
description hypothetical protein
nr
ID XP_012087153.1
description PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
swissprot
ID Q940Y1
description Oxysterol-binding protein-related protein 2A OS=Arabidopsis thaliana GN=ORP2A PE=2 SV=1
trembl
ID A0A067JP21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20798 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11094: 355420-356179 , PASA_asmbl_11095: 356226-359576 , PASA_asmbl_11096: 363238-364431
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000141_250 0.0 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
2 Hb_008511_130 0.0460381787 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
3 Hb_000230_560 0.0545652397 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
4 Hb_005288_150 0.0571875477 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
5 Hb_002997_080 0.0616382125 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
6 Hb_000390_170 0.0652364502 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
7 Hb_002197_020 0.0724208519 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
8 Hb_000260_100 0.0746071009 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000808_050 0.0752102277 - - exonuclease, putative [Ricinus communis]
10 Hb_012725_070 0.0759760959 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]
11 Hb_009545_080 0.0765911117 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
12 Hb_000618_040 0.0776422625 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
13 Hb_003813_040 0.0780570156 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
14 Hb_000094_300 0.0849367325 - - hypothetical protein POPTR_0002s26360g [Populus trichocarpa]
15 Hb_000445_050 0.0852622331 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
16 Hb_000883_020 0.0868772506 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
17 Hb_007075_040 0.0873935002 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
18 Hb_004007_220 0.088720213 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
19 Hb_005357_080 0.089104938 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
20 Hb_001377_320 0.0895838772 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]

Gene co-expression network

sample Hb_000141_250 Hb_000141_250 Hb_008511_130 Hb_008511_130 Hb_000141_250--Hb_008511_130 Hb_000230_560 Hb_000230_560 Hb_000141_250--Hb_000230_560 Hb_005288_150 Hb_005288_150 Hb_000141_250--Hb_005288_150 Hb_002997_080 Hb_002997_080 Hb_000141_250--Hb_002997_080 Hb_000390_170 Hb_000390_170 Hb_000141_250--Hb_000390_170 Hb_002197_020 Hb_002197_020 Hb_000141_250--Hb_002197_020 Hb_008511_130--Hb_002997_080 Hb_008511_130--Hb_000230_560 Hb_008511_130--Hb_000390_170 Hb_000618_040 Hb_000618_040 Hb_008511_130--Hb_000618_040 Hb_000094_300 Hb_000094_300 Hb_008511_130--Hb_000094_300 Hb_000230_560--Hb_002997_080 Hb_003665_060 Hb_003665_060 Hb_000230_560--Hb_003665_060 Hb_003030_070 Hb_003030_070 Hb_000230_560--Hb_003030_070 Hb_007075_040 Hb_007075_040 Hb_000230_560--Hb_007075_040 Hb_000883_020 Hb_000883_020 Hb_000230_560--Hb_000883_020 Hb_000260_100 Hb_000260_100 Hb_005288_150--Hb_000260_100 Hb_020367_050 Hb_020367_050 Hb_005288_150--Hb_020367_050 Hb_005288_150--Hb_002997_080 Hb_002639_150 Hb_002639_150 Hb_005288_150--Hb_002639_150 Hb_001329_130 Hb_001329_130 Hb_005288_150--Hb_001329_130 Hb_002997_080--Hb_000260_100 Hb_002997_080--Hb_000883_020 Hb_032986_010 Hb_032986_010 Hb_002997_080--Hb_032986_010 Hb_004007_220 Hb_004007_220 Hb_002997_080--Hb_004007_220 Hb_000390_170--Hb_005288_150 Hb_003020_010 Hb_003020_010 Hb_000390_170--Hb_003020_010 Hb_006817_010 Hb_006817_010 Hb_000390_170--Hb_006817_010 Hb_002950_100 Hb_002950_100 Hb_000390_170--Hb_002950_100 Hb_000039_220 Hb_000039_220 Hb_002197_020--Hb_000039_220 Hb_007982_080 Hb_007982_080 Hb_002197_020--Hb_007982_080 Hb_000185_070 Hb_000185_070 Hb_002197_020--Hb_000185_070 Hb_001981_030 Hb_001981_030 Hb_002197_020--Hb_001981_030 Hb_002872_030 Hb_002872_030 Hb_002197_020--Hb_002872_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4048 5.56005 13.8689 8.78062 10.8644 13.3656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2667 8.56653 10.6828 6.68092 5.89112

CAGE analysis