Hb_001981_030

Information

Type -
Description -
Location Contig1981: 65552-70754
Sequence    

Annotation

kegg
ID rcu:RCOM_1577640
description nuclear acid binding protein, putative
nr
ID XP_002513488.1
description nuclear acid binding protein, putative [Ricinus communis]
swissprot
ID Q8VXZ9
description Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana GN=RBP47B' PE=2 SV=1
trembl
ID B9RIB9
description Nuclear acid binding protein, putative OS=Ricinus communis GN=RCOM_1577640 PE=4 SV=1
Gene Ontology
ID GO:0043229
description polyadenylate-binding protein rbp47b -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19894: 65570-70868 , PASA_asmbl_19895: 69787-70143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001981_030 0.0 - - nuclear acid binding protein, putative [Ricinus communis]
2 Hb_005000_190 0.0623159507 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
3 Hb_002686_170 0.0686507606 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
4 Hb_000185_070 0.071675609 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001153_190 0.0765611392 - - PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
6 Hb_002197_020 0.0768340137 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
7 Hb_000915_180 0.0779614341 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
8 Hb_023344_120 0.0782475062 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
9 Hb_000345_380 0.0783068061 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
10 Hb_004619_030 0.0795302713 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
11 Hb_000575_040 0.0801645484 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
12 Hb_032986_010 0.0802764413 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
13 Hb_011995_010 0.0808014801 - - dc50, putative [Ricinus communis]
14 Hb_000915_020 0.081305431 - - unnamed protein product [Vitis vinifera]
15 Hb_003861_050 0.0823690642 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
16 Hb_001252_120 0.0827954793 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
17 Hb_001408_140 0.0829771185 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
18 Hb_000331_550 0.0835179433 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
19 Hb_000010_400 0.0840273913 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
20 Hb_003464_090 0.0843399691 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]

Gene co-expression network

sample Hb_001981_030 Hb_001981_030 Hb_005000_190 Hb_005000_190 Hb_001981_030--Hb_005000_190 Hb_002686_170 Hb_002686_170 Hb_001981_030--Hb_002686_170 Hb_000185_070 Hb_000185_070 Hb_001981_030--Hb_000185_070 Hb_001153_190 Hb_001153_190 Hb_001981_030--Hb_001153_190 Hb_002197_020 Hb_002197_020 Hb_001981_030--Hb_002197_020 Hb_000915_180 Hb_000915_180 Hb_001981_030--Hb_000915_180 Hb_001158_070 Hb_001158_070 Hb_005000_190--Hb_001158_070 Hb_002843_120 Hb_002843_120 Hb_005000_190--Hb_002843_120 Hb_000603_280 Hb_000603_280 Hb_005000_190--Hb_000603_280 Hb_005000_190--Hb_001153_190 Hb_032202_140 Hb_032202_140 Hb_005000_190--Hb_032202_140 Hb_002686_170--Hb_002197_020 Hb_010368_010 Hb_010368_010 Hb_002686_170--Hb_010368_010 Hb_002876_230 Hb_002876_230 Hb_002686_170--Hb_002876_230 Hb_021576_100 Hb_021576_100 Hb_002686_170--Hb_021576_100 Hb_005000_170 Hb_005000_170 Hb_002686_170--Hb_005000_170 Hb_000302_270 Hb_000302_270 Hb_000185_070--Hb_000302_270 Hb_027428_010 Hb_027428_010 Hb_000185_070--Hb_027428_010 Hb_005337_090 Hb_005337_090 Hb_000185_070--Hb_005337_090 Hb_003528_010 Hb_003528_010 Hb_000185_070--Hb_003528_010 Hb_002872_030 Hb_002872_030 Hb_000185_070--Hb_002872_030 Hb_005918_010 Hb_005918_010 Hb_001153_190--Hb_005918_010 Hb_002805_190 Hb_002805_190 Hb_001153_190--Hb_002805_190 Hb_000162_030 Hb_000162_030 Hb_001153_190--Hb_000162_030 Hb_002046_110 Hb_002046_110 Hb_001153_190--Hb_002046_110 Hb_000141_250 Hb_000141_250 Hb_002197_020--Hb_000141_250 Hb_000039_220 Hb_000039_220 Hb_002197_020--Hb_000039_220 Hb_007982_080 Hb_007982_080 Hb_002197_020--Hb_007982_080 Hb_002197_020--Hb_000185_070 Hb_002197_020--Hb_002872_030 Hb_013358_040 Hb_013358_040 Hb_000915_180--Hb_013358_040 Hb_001195_530 Hb_001195_530 Hb_000915_180--Hb_001195_530 Hb_000069_310 Hb_000069_310 Hb_000915_180--Hb_000069_310 Hb_021419_030 Hb_021419_030 Hb_000915_180--Hb_021419_030 Hb_001408_140 Hb_001408_140 Hb_000915_180--Hb_001408_140 Hb_000331_680 Hb_000331_680 Hb_000915_180--Hb_000331_680
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.205 50.5514 62.564 40.3438 50.2831 47.5041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.0029 42.1849 57.9545 57.268 33.9806

CAGE analysis