Hb_000069_310

Information

Type -
Description -
Location Contig69: 323474-334525
Sequence    

Annotation

kegg
ID csv:101215696
description uncharacterized LOC101215696
nr
ID ADN33741.1
description ubiquitin ligase [Cucumis melo subsp. melo]
swissprot
ID Q84JL3
description E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1
trembl
ID E5GB99
description E3 ubiquitin-protein ligase OS=Cucumis melo subsp. melo PE=3 SV=1
Gene Ontology
ID GO:0005634
description ubiquitin ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54203: 325628-330027 , PASA_asmbl_54206: 329061-329398 , PASA_asmbl_54209: 331373-334547 , PASA_asmbl_54210: 333170-333943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_310 0.0 - - ubiquitin ligase [Cucumis melo subsp. melo]
2 Hb_013358_040 0.0529349197 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
3 Hb_003849_110 0.0591105383 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
4 Hb_000915_180 0.0614033372 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
5 Hb_002818_030 0.0616842676 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
6 Hb_001473_160 0.0641907102 - - Vesicle-associated membrane protein, putative [Ricinus communis]
7 Hb_000331_680 0.0646143045 - - Protein bem46, putative [Ricinus communis]
8 Hb_001195_530 0.0654522858 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003464_090 0.0675080747 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
10 Hb_003906_200 0.0677940954 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
11 Hb_000025_730 0.0677997325 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
12 Hb_065525_040 0.067829006 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
13 Hb_000077_140 0.0679501629 - - structural constituent of cell wall, putative [Ricinus communis]
14 Hb_000732_010 0.0693337372 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
15 Hb_000868_090 0.0723128901 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
16 Hb_000088_170 0.0732095617 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
17 Hb_002073_200 0.0733512639 - - Phosphatase 2A-2 [Theobroma cacao]
18 Hb_000029_060 0.0741137336 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
19 Hb_019863_070 0.0749171896 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
20 Hb_024621_040 0.0751241968 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]

Gene co-expression network

sample Hb_000069_310 Hb_000069_310 Hb_013358_040 Hb_013358_040 Hb_000069_310--Hb_013358_040 Hb_003849_110 Hb_003849_110 Hb_000069_310--Hb_003849_110 Hb_000915_180 Hb_000915_180 Hb_000069_310--Hb_000915_180 Hb_002818_030 Hb_002818_030 Hb_000069_310--Hb_002818_030 Hb_001473_160 Hb_001473_160 Hb_000069_310--Hb_001473_160 Hb_000331_680 Hb_000331_680 Hb_000069_310--Hb_000331_680 Hb_013358_040--Hb_000915_180 Hb_164010_040 Hb_164010_040 Hb_013358_040--Hb_164010_040 Hb_002073_200 Hb_002073_200 Hb_013358_040--Hb_002073_200 Hb_003428_010 Hb_003428_010 Hb_013358_040--Hb_003428_010 Hb_000869_080 Hb_000869_080 Hb_013358_040--Hb_000869_080 Hb_003464_090 Hb_003464_090 Hb_003849_110--Hb_003464_090 Hb_003849_110--Hb_003428_010 Hb_019863_070 Hb_019863_070 Hb_003849_110--Hb_019863_070 Hb_000029_060 Hb_000029_060 Hb_003849_110--Hb_000029_060 Hb_004916_010 Hb_004916_010 Hb_003849_110--Hb_004916_010 Hb_003849_110--Hb_002818_030 Hb_001195_530 Hb_001195_530 Hb_000915_180--Hb_001195_530 Hb_021419_030 Hb_021419_030 Hb_000915_180--Hb_021419_030 Hb_001408_140 Hb_001408_140 Hb_000915_180--Hb_001408_140 Hb_000915_180--Hb_000331_680 Hb_002818_030--Hb_004916_010 Hb_002818_030--Hb_019863_070 Hb_000049_260 Hb_000049_260 Hb_002818_030--Hb_000049_260 Hb_002798_070 Hb_002798_070 Hb_002818_030--Hb_002798_070 Hb_000072_120 Hb_000072_120 Hb_001473_160--Hb_000072_120 Hb_000329_230 Hb_000329_230 Hb_001473_160--Hb_000329_230 Hb_000637_110 Hb_000637_110 Hb_001473_160--Hb_000637_110 Hb_002028_210 Hb_002028_210 Hb_001473_160--Hb_002028_210 Hb_003906_200 Hb_003906_200 Hb_001473_160--Hb_003906_200 Hb_093458_040 Hb_093458_040 Hb_001473_160--Hb_093458_040 Hb_000077_140 Hb_000077_140 Hb_000331_680--Hb_000077_140 Hb_005653_090 Hb_005653_090 Hb_000331_680--Hb_005653_090 Hb_000331_680--Hb_003464_090 Hb_002890_290 Hb_002890_290 Hb_000331_680--Hb_002890_290 Hb_000327_270 Hb_000327_270 Hb_000331_680--Hb_000327_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2521 28.7134 20.5395 25.3644 17.9662 16.0232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8234 20.489 25.0281 15.8801 19.2774

CAGE analysis