Hb_000029_060

Information

Type -
Description -
Location Contig29: 79609-86375
Sequence    

Annotation

kegg
ID pop:POPTR_0009s16180g
description POPTRDRAFT_767046; hypothetical protein
nr
ID XP_012077850.1
description PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
swissprot
ID Q9SJF3
description mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=1 SV=2
trembl
ID A0A067KMT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13561 PE=4 SV=1
Gene Ontology
ID GO:0016787
description mrna-decapping enzyme-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30338: 73543-79079 , PASA_asmbl_30341: 84251-84498 , PASA_asmbl_30342: 79626-86403 , PASA_asmbl_30343: 84706-84923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_060 0.0 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
2 Hb_003849_110 0.0554126927 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
3 Hb_001716_020 0.055667779 - - hydrolase, putative [Ricinus communis]
4 Hb_004916_010 0.058565077 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
5 Hb_002110_080 0.0601406073 - - FH interacting protein 1 [Theobroma cacao]
6 Hb_000086_420 0.061827309 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
7 Hb_000327_140 0.0620840319 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
8 Hb_002492_010 0.064717216 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
9 Hb_010068_080 0.0649341016 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
10 Hb_003906_200 0.0657412097 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
11 Hb_000521_330 0.0658335354 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000738_020 0.0669422015 - - zinc finger protein, putative [Ricinus communis]
13 Hb_012239_020 0.0673276925 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
14 Hb_062226_130 0.0679157438 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
15 Hb_000292_100 0.0680224481 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
16 Hb_002818_030 0.0681160544 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
17 Hb_001259_050 0.0691166706 - - calcium lipid binding protein, putative [Ricinus communis]
18 Hb_001481_060 0.0707135173 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
19 Hb_004994_240 0.0712045852 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
20 Hb_000365_230 0.0726388066 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]

Gene co-expression network

sample Hb_000029_060 Hb_000029_060 Hb_003849_110 Hb_003849_110 Hb_000029_060--Hb_003849_110 Hb_001716_020 Hb_001716_020 Hb_000029_060--Hb_001716_020 Hb_004916_010 Hb_004916_010 Hb_000029_060--Hb_004916_010 Hb_002110_080 Hb_002110_080 Hb_000029_060--Hb_002110_080 Hb_000086_420 Hb_000086_420 Hb_000029_060--Hb_000086_420 Hb_000327_140 Hb_000327_140 Hb_000029_060--Hb_000327_140 Hb_003464_090 Hb_003464_090 Hb_003849_110--Hb_003464_090 Hb_003428_010 Hb_003428_010 Hb_003849_110--Hb_003428_010 Hb_019863_070 Hb_019863_070 Hb_003849_110--Hb_019863_070 Hb_003849_110--Hb_004916_010 Hb_002818_030 Hb_002818_030 Hb_003849_110--Hb_002818_030 Hb_002492_010 Hb_002492_010 Hb_001716_020--Hb_002492_010 Hb_001481_060 Hb_001481_060 Hb_001716_020--Hb_001481_060 Hb_105105_010 Hb_105105_010 Hb_001716_020--Hb_105105_010 Hb_002205_250 Hb_002205_250 Hb_001716_020--Hb_002205_250 Hb_000028_130 Hb_000028_130 Hb_001716_020--Hb_000028_130 Hb_004916_010--Hb_002818_030 Hb_002234_090 Hb_002234_090 Hb_004916_010--Hb_002234_090 Hb_000015_170 Hb_000015_170 Hb_004916_010--Hb_000015_170 Hb_004916_010--Hb_001716_020 Hb_002110_080--Hb_001481_060 Hb_002110_080--Hb_002492_010 Hb_002110_080--Hb_001716_020 Hb_000087_060 Hb_000087_060 Hb_002110_080--Hb_000087_060 Hb_000962_030 Hb_000962_030 Hb_002110_080--Hb_000962_030 Hb_000086_420--Hb_000327_140 Hb_012239_020 Hb_012239_020 Hb_000086_420--Hb_012239_020 Hb_004994_240 Hb_004994_240 Hb_000086_420--Hb_004994_240 Hb_000292_100 Hb_000292_100 Hb_000086_420--Hb_000292_100 Hb_000738_020 Hb_000738_020 Hb_000086_420--Hb_000738_020 Hb_000327_140--Hb_012239_020 Hb_000327_140--Hb_004994_240 Hb_000120_030 Hb_000120_030 Hb_000327_140--Hb_000120_030 Hb_002232_480 Hb_002232_480 Hb_000327_140--Hb_002232_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.59084 17.4521 12.1445 13.6231 7.37118 9.48085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.65772 12.8242 10.6948 9.79206 12.4517

CAGE analysis