Hb_000087_060

Information

Type -
Description -
Location Contig87: 173312-177400
Sequence    

Annotation

kegg
ID rcu:RCOM_1325470
description protein transporter, putative
nr
ID XP_002520034.1
description protein transporter, putative [Ricinus communis]
swissprot
ID Q6ZVM7
description TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1
trembl
ID B9S215
description Protein transporter, putative OS=Ricinus communis GN=RCOM_1325470 PE=4 SV=1
Gene Ontology
ID GO:0005829
description tom1-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61134: 172858-177367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000087_060 0.0 - - protein transporter, putative [Ricinus communis]
2 Hb_001205_200 0.0462428677 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002492_010 0.05484306 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
4 Hb_001089_050 0.0572533148 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
5 Hb_000358_230 0.0577885045 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
6 Hb_000076_160 0.0603427433 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
7 Hb_000454_130 0.0605052135 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
8 Hb_003927_040 0.0618581843 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
9 Hb_001195_530 0.064291906 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002110_080 0.0656485226 - - FH interacting protein 1 [Theobroma cacao]
11 Hb_003866_080 0.0671738238 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
12 Hb_002028_210 0.0675564027 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
13 Hb_004096_180 0.0676338918 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
14 Hb_020831_030 0.0678527801 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002876_130 0.0683692833 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
16 Hb_001720_040 0.0686031111 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000705_170 0.0692649448 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
18 Hb_000359_040 0.069678566 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004143_100 0.0697663177 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000861_080 0.0706476021 - - PREDICTED: protein ELC-like [Jatropha curcas]

Gene co-expression network

sample Hb_000087_060 Hb_000087_060 Hb_001205_200 Hb_001205_200 Hb_000087_060--Hb_001205_200 Hb_002492_010 Hb_002492_010 Hb_000087_060--Hb_002492_010 Hb_001089_050 Hb_001089_050 Hb_000087_060--Hb_001089_050 Hb_000358_230 Hb_000358_230 Hb_000087_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_000087_060--Hb_000076_160 Hb_000454_130 Hb_000454_130 Hb_000087_060--Hb_000454_130 Hb_004143_100 Hb_004143_100 Hb_001205_200--Hb_004143_100 Hb_001205_200--Hb_000076_160 Hb_000402_230 Hb_000402_230 Hb_001205_200--Hb_000402_230 Hb_001205_200--Hb_000358_230 Hb_003866_080 Hb_003866_080 Hb_001205_200--Hb_003866_080 Hb_001716_020 Hb_001716_020 Hb_002492_010--Hb_001716_020 Hb_001481_060 Hb_001481_060 Hb_002492_010--Hb_001481_060 Hb_004994_240 Hb_004994_240 Hb_002492_010--Hb_004994_240 Hb_002492_010--Hb_001089_050 Hb_002492_010--Hb_004143_100 Hb_001089_050--Hb_003866_080 Hb_001089_050--Hb_000402_230 Hb_000861_080 Hb_000861_080 Hb_001089_050--Hb_000861_080 Hb_001545_150 Hb_001545_150 Hb_001089_050--Hb_001545_150 Hb_001089_050--Hb_004143_100 Hb_001089_050--Hb_001716_020 Hb_000358_230--Hb_000076_160 Hb_003096_060 Hb_003096_060 Hb_000358_230--Hb_003096_060 Hb_154580_010 Hb_154580_010 Hb_000358_230--Hb_154580_010 Hb_000928_220 Hb_000928_220 Hb_000358_230--Hb_000928_220 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000076_160--Hb_000928_220 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_000454_130--Hb_001089_050 Hb_003927_040 Hb_003927_040 Hb_000454_130--Hb_003927_040 Hb_000454_130--Hb_002492_010 Hb_000454_130--Hb_001716_020 Hb_002028_210 Hb_002028_210 Hb_000454_130--Hb_002028_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.2596 73.7525 58.425 54.4404 45.4358 47.66
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.6398 50.3237 34.7773 43.4308 34.1336

CAGE analysis