Hb_003866_080

Information

Type -
Description -
Location Contig3866: 139416-144595
Sequence    

Annotation

kegg
ID rcu:RCOM_1316050
description hypothetical protein
nr
ID XP_012078506.1
description PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8S6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13186 PE=4 SV=1
Gene Ontology
ID GO:0008270
description swim zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38856: 140629-141263 , PASA_asmbl_38858: 141969-144504
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003866_080 0.0 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
2 Hb_001089_050 0.0336894892 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
3 Hb_000402_230 0.0530721459 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
4 Hb_004143_100 0.0535969659 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001767_140 0.055278044 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
6 Hb_002085_030 0.0580995289 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
7 Hb_002492_010 0.0602811062 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
8 Hb_001545_150 0.0616759474 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
9 Hb_002276_240 0.0629205206 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
10 Hb_003835_070 0.0637357842 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
11 Hb_140049_040 0.0637516789 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
12 Hb_012194_030 0.0652389097 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
13 Hb_003927_040 0.0657189072 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
14 Hb_000861_080 0.0664357204 - - PREDICTED: protein ELC-like [Jatropha curcas]
15 Hb_000614_210 0.0668834992 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
16 Hb_005653_090 0.0670311319 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
17 Hb_000087_060 0.0671738238 - - protein transporter, putative [Ricinus communis]
18 Hb_001205_200 0.0683707439 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008253_020 0.0683772558 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
20 Hb_010417_070 0.0685918364 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003866_080 Hb_003866_080 Hb_001089_050 Hb_001089_050 Hb_003866_080--Hb_001089_050 Hb_000402_230 Hb_000402_230 Hb_003866_080--Hb_000402_230 Hb_004143_100 Hb_004143_100 Hb_003866_080--Hb_004143_100 Hb_001767_140 Hb_001767_140 Hb_003866_080--Hb_001767_140 Hb_002085_030 Hb_002085_030 Hb_003866_080--Hb_002085_030 Hb_002492_010 Hb_002492_010 Hb_003866_080--Hb_002492_010 Hb_001089_050--Hb_000402_230 Hb_000861_080 Hb_000861_080 Hb_001089_050--Hb_000861_080 Hb_001545_150 Hb_001545_150 Hb_001089_050--Hb_001545_150 Hb_001089_050--Hb_004143_100 Hb_001716_020 Hb_001716_020 Hb_001089_050--Hb_001716_020 Hb_000402_230--Hb_004143_100 Hb_000009_500 Hb_000009_500 Hb_000402_230--Hb_000009_500 Hb_008253_020 Hb_008253_020 Hb_000402_230--Hb_008253_020 Hb_011849_040 Hb_011849_040 Hb_000402_230--Hb_011849_040 Hb_004128_130 Hb_004128_130 Hb_004143_100--Hb_004128_130 Hb_003120_080 Hb_003120_080 Hb_004143_100--Hb_003120_080 Hb_004143_100--Hb_002492_010 Hb_008253_030 Hb_008253_030 Hb_001767_140--Hb_008253_030 Hb_002253_080 Hb_002253_080 Hb_001767_140--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_001767_140--Hb_002267_140 Hb_140049_040 Hb_140049_040 Hb_001767_140--Hb_140049_040 Hb_000174_060 Hb_000174_060 Hb_001767_140--Hb_000174_060 Hb_012305_030 Hb_012305_030 Hb_002085_030--Hb_012305_030 Hb_012194_030 Hb_012194_030 Hb_002085_030--Hb_012194_030 Hb_002085_030--Hb_001767_140 Hb_001279_120 Hb_001279_120 Hb_002085_030--Hb_001279_120 Hb_000329_370 Hb_000329_370 Hb_002085_030--Hb_000329_370 Hb_002492_010--Hb_001716_020 Hb_001481_060 Hb_001481_060 Hb_002492_010--Hb_001481_060 Hb_000087_060 Hb_000087_060 Hb_002492_010--Hb_000087_060 Hb_004994_240 Hb_004994_240 Hb_002492_010--Hb_004994_240 Hb_002492_010--Hb_001089_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.93493 9.96255 5.52472 5.65164 4.8239 5.96781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.60743 4.71641 4.29869 5.53596 4.81859

CAGE analysis