Hb_011849_040

Information

Type -
Description -
Location Contig11849: 53566-60362
Sequence    

Annotation

kegg
ID rcu:RCOM_0746720
description ubiquitin-protein ligase, putative
nr
ID XP_002530130.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q759M1
description Protein SIP5 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SIP5 PE=3 SV=2
trembl
ID B9SVW1
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0746720 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05491: 53101-60039
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011849_040 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_000009_500 0.034974383 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
3 Hb_079326_020 0.0476594586 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000402_230 0.053190551 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
5 Hb_002026_210 0.0578194643 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
6 Hb_004143_100 0.0597665331 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000614_210 0.0614238086 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
8 Hb_003120_080 0.0635545344 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
9 Hb_159558_010 0.0636290393 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
10 Hb_003943_010 0.064188864 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002960_080 0.0644416366 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
12 Hb_031527_030 0.0649070878 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
13 Hb_005568_040 0.0666597357 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
14 Hb_001716_020 0.0669521332 - - hydrolase, putative [Ricinus communis]
15 Hb_000479_240 0.069138256 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
16 Hb_004109_230 0.0692436567 - - heat shock protein binding protein, putative [Ricinus communis]
17 Hb_003912_070 0.0732614323 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
18 Hb_004586_220 0.0735511197 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
19 Hb_000008_240 0.0741897944 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000028_130 0.0746546181 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011849_040 Hb_011849_040 Hb_000009_500 Hb_000009_500 Hb_011849_040--Hb_000009_500 Hb_079326_020 Hb_079326_020 Hb_011849_040--Hb_079326_020 Hb_000402_230 Hb_000402_230 Hb_011849_040--Hb_000402_230 Hb_002026_210 Hb_002026_210 Hb_011849_040--Hb_002026_210 Hb_004143_100 Hb_004143_100 Hb_011849_040--Hb_004143_100 Hb_000614_210 Hb_000614_210 Hb_011849_040--Hb_000614_210 Hb_000009_500--Hb_000402_230 Hb_000009_500--Hb_079326_020 Hb_000009_500--Hb_002026_210 Hb_004109_230 Hb_004109_230 Hb_000009_500--Hb_004109_230 Hb_000009_500--Hb_000614_210 Hb_001716_020 Hb_001716_020 Hb_079326_020--Hb_001716_020 Hb_001089_050 Hb_001089_050 Hb_079326_020--Hb_001089_050 Hb_002960_080 Hb_002960_080 Hb_079326_020--Hb_002960_080 Hb_079326_020--Hb_000402_230 Hb_000402_230--Hb_004143_100 Hb_000402_230--Hb_001089_050 Hb_008253_020 Hb_008253_020 Hb_000402_230--Hb_008253_020 Hb_003866_080 Hb_003866_080 Hb_000402_230--Hb_003866_080 Hb_028512_020 Hb_028512_020 Hb_002026_210--Hb_028512_020 Hb_002026_210--Hb_000614_210 Hb_000923_010 Hb_000923_010 Hb_002026_210--Hb_000923_010 Hb_000340_530 Hb_000340_530 Hb_002026_210--Hb_000340_530 Hb_004143_100--Hb_003866_080 Hb_004128_130 Hb_004128_130 Hb_004143_100--Hb_004128_130 Hb_004143_100--Hb_001089_050 Hb_003120_080 Hb_003120_080 Hb_004143_100--Hb_003120_080 Hb_002492_010 Hb_002492_010 Hb_004143_100--Hb_002492_010 Hb_159558_010 Hb_159558_010 Hb_000614_210--Hb_159558_010 Hb_002205_250 Hb_002205_250 Hb_000614_210--Hb_002205_250 Hb_003835_070 Hb_003835_070 Hb_000614_210--Hb_003835_070 Hb_001814_030 Hb_001814_030 Hb_000614_210--Hb_001814_030 Hb_162275_050 Hb_162275_050 Hb_000614_210--Hb_162275_050 Hb_105105_010 Hb_105105_010 Hb_000614_210--Hb_105105_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.84889 19.1985 9.97527 15.8954 11.8326 14.1293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.43699 8.66582 8.84422 13.7077 11.9487

CAGE analysis