Hb_079326_020

Information

Type -
Description -
Location Contig79326: 8304-12313
Sequence    

Annotation

kegg
ID rcu:RCOM_1039680
description hypothetical protein
nr
ID XP_002514055.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O04492
description Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1
trembl
ID B9RJY6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1039680 PE=4 SV=1
Gene Ontology
ID GO:0003723
description double-stranded rna-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079326_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011849_040 0.0476594586 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000009_500 0.0542446012 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
4 Hb_001716_020 0.057876227 - - hydrolase, putative [Ricinus communis]
5 Hb_001089_050 0.0616985351 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
6 Hb_002960_080 0.0639264017 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
7 Hb_000402_230 0.0651104951 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
8 Hb_002026_210 0.0687045354 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
9 Hb_002110_080 0.0702926603 - - FH interacting protein 1 [Theobroma cacao]
10 Hb_004143_100 0.0707325756 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000614_210 0.0707352764 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
12 Hb_000028_130 0.074174797 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
13 Hb_031042_050 0.0760783246 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
14 Hb_001481_060 0.0774261415 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
15 Hb_002492_010 0.0777997977 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
16 Hb_003943_010 0.0794165501 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003912_040 0.0813223977 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
18 Hb_159558_010 0.0819009157 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
19 Hb_001545_150 0.0822597208 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
20 Hb_005730_040 0.0828104444 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]

Gene co-expression network

sample Hb_079326_020 Hb_079326_020 Hb_011849_040 Hb_011849_040 Hb_079326_020--Hb_011849_040 Hb_000009_500 Hb_000009_500 Hb_079326_020--Hb_000009_500 Hb_001716_020 Hb_001716_020 Hb_079326_020--Hb_001716_020 Hb_001089_050 Hb_001089_050 Hb_079326_020--Hb_001089_050 Hb_002960_080 Hb_002960_080 Hb_079326_020--Hb_002960_080 Hb_000402_230 Hb_000402_230 Hb_079326_020--Hb_000402_230 Hb_011849_040--Hb_000009_500 Hb_011849_040--Hb_000402_230 Hb_002026_210 Hb_002026_210 Hb_011849_040--Hb_002026_210 Hb_004143_100 Hb_004143_100 Hb_011849_040--Hb_004143_100 Hb_000614_210 Hb_000614_210 Hb_011849_040--Hb_000614_210 Hb_000009_500--Hb_000402_230 Hb_000009_500--Hb_002026_210 Hb_004109_230 Hb_004109_230 Hb_000009_500--Hb_004109_230 Hb_000009_500--Hb_000614_210 Hb_002492_010 Hb_002492_010 Hb_001716_020--Hb_002492_010 Hb_001481_060 Hb_001481_060 Hb_001716_020--Hb_001481_060 Hb_105105_010 Hb_105105_010 Hb_001716_020--Hb_105105_010 Hb_002205_250 Hb_002205_250 Hb_001716_020--Hb_002205_250 Hb_000028_130 Hb_000028_130 Hb_001716_020--Hb_000028_130 Hb_000029_060 Hb_000029_060 Hb_001716_020--Hb_000029_060 Hb_003866_080 Hb_003866_080 Hb_001089_050--Hb_003866_080 Hb_001089_050--Hb_000402_230 Hb_000861_080 Hb_000861_080 Hb_001089_050--Hb_000861_080 Hb_001545_150 Hb_001545_150 Hb_001089_050--Hb_001545_150 Hb_001089_050--Hb_004143_100 Hb_001089_050--Hb_001716_020 Hb_043362_010 Hb_043362_010 Hb_002960_080--Hb_043362_010 Hb_002960_080--Hb_011849_040 Hb_000069_470 Hb_000069_470 Hb_002960_080--Hb_000069_470 Hb_001188_020 Hb_001188_020 Hb_002960_080--Hb_001188_020 Hb_003581_170 Hb_003581_170 Hb_002960_080--Hb_003581_170 Hb_000402_230--Hb_004143_100 Hb_008253_020 Hb_008253_020 Hb_000402_230--Hb_008253_020 Hb_000402_230--Hb_003866_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.48269 14.588 7.60352 10.5277 7.99779 10.3995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.1734 7.33528 6.24877 7.48652 9.7804

CAGE analysis