Hb_002960_080

Information

Type transcription factor
Description TF Family: IWS1
Location Contig2960: 61424-64459
Sequence    

Annotation

kegg
ID rcu:RCOM_1598300
description hypothetical protein
nr
ID XP_012073776.1
description PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08196 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription elongation factor family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30948: 61034-66106 , PASA_asmbl_30949: 65015-65451
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002960_080 0.0 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
2 Hb_043362_010 0.0543693125 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
3 Hb_079326_020 0.0639264017 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011849_040 0.0644416366 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_000069_470 0.0689077269 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
6 Hb_001188_020 0.070847499 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
7 Hb_003581_170 0.0722563283 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
8 Hb_005542_140 0.0767415998 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
9 Hb_004586_290 0.0779033479 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
10 Hb_003768_050 0.0779200845 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
11 Hb_031042_050 0.0780643305 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
12 Hb_005568_040 0.0783068926 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
13 Hb_000009_500 0.078478368 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
14 Hb_159558_010 0.0791892422 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
15 Hb_000170_150 0.0795595615 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
16 Hb_011242_060 0.0796354288 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
17 Hb_003912_070 0.0807300627 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
18 Hb_013399_070 0.0807827331 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
19 Hb_000105_040 0.0817246847 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
20 Hb_000479_240 0.0825709043 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002960_080 Hb_002960_080 Hb_043362_010 Hb_043362_010 Hb_002960_080--Hb_043362_010 Hb_079326_020 Hb_079326_020 Hb_002960_080--Hb_079326_020 Hb_011849_040 Hb_011849_040 Hb_002960_080--Hb_011849_040 Hb_000069_470 Hb_000069_470 Hb_002960_080--Hb_000069_470 Hb_001188_020 Hb_001188_020 Hb_002960_080--Hb_001188_020 Hb_003581_170 Hb_003581_170 Hb_002960_080--Hb_003581_170 Hb_043362_010--Hb_001188_020 Hb_002007_110 Hb_002007_110 Hb_043362_010--Hb_002007_110 Hb_003912_070 Hb_003912_070 Hb_043362_010--Hb_003912_070 Hb_043362_010--Hb_003581_170 Hb_003805_040 Hb_003805_040 Hb_043362_010--Hb_003805_040 Hb_079326_020--Hb_011849_040 Hb_000009_500 Hb_000009_500 Hb_079326_020--Hb_000009_500 Hb_001716_020 Hb_001716_020 Hb_079326_020--Hb_001716_020 Hb_001089_050 Hb_001089_050 Hb_079326_020--Hb_001089_050 Hb_000402_230 Hb_000402_230 Hb_079326_020--Hb_000402_230 Hb_011849_040--Hb_000009_500 Hb_011849_040--Hb_000402_230 Hb_002026_210 Hb_002026_210 Hb_011849_040--Hb_002026_210 Hb_004143_100 Hb_004143_100 Hb_011849_040--Hb_004143_100 Hb_000614_210 Hb_000614_210 Hb_011849_040--Hb_000614_210 Hb_011242_060 Hb_011242_060 Hb_000069_470--Hb_011242_060 Hb_031042_050 Hb_031042_050 Hb_000069_470--Hb_031042_050 Hb_006117_080 Hb_006117_080 Hb_000069_470--Hb_006117_080 Hb_000025_280 Hb_000025_280 Hb_000069_470--Hb_000025_280 Hb_001104_190 Hb_001104_190 Hb_000069_470--Hb_001104_190 Hb_004483_040 Hb_004483_040 Hb_000069_470--Hb_004483_040 Hb_002639_080 Hb_002639_080 Hb_001188_020--Hb_002639_080 Hb_005656_040 Hb_005656_040 Hb_001188_020--Hb_005656_040 Hb_071130_010 Hb_071130_010 Hb_001188_020--Hb_071130_010 Hb_007994_010 Hb_007994_010 Hb_001188_020--Hb_007994_010 Hb_000537_050 Hb_000537_050 Hb_001188_020--Hb_000537_050 Hb_000105_040 Hb_000105_040 Hb_003581_170--Hb_000105_040 Hb_000176_100 Hb_000176_100 Hb_003581_170--Hb_000176_100 Hb_000949_010 Hb_000949_010 Hb_003581_170--Hb_000949_010 Hb_001699_280 Hb_001699_280 Hb_003581_170--Hb_001699_280 Hb_003581_170--Hb_011242_060 Hb_000836_020 Hb_000836_020 Hb_003581_170--Hb_000836_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.1781 18.8184 6.68474 10.1556 8.55197 12.6558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.24121 5.85362 7.42327 10.3284 11.6254

CAGE analysis