Hb_000949_010

Information

Type -
Description -
Location Contig949: 112458-126204
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22310g
description POPTRDRAFT_886092; hypothetical protein
nr
ID XP_012073660.1
description PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
swissprot
ID F4IUX6
description Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana GN=UPF2 PE=2 SV=1
trembl
ID A0A067LFU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06659 PE=4 SV=1
Gene Ontology
ID GO:0003723
description regulator of nonsense transcripts upf2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63379: 112471-126156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000949_010 0.0 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
2 Hb_003284_030 0.0492375884 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
3 Hb_011947_050 0.0519327199 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
4 Hb_000176_100 0.0520468248 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
5 Hb_003581_170 0.0554617262 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
6 Hb_001959_020 0.0607986975 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
7 Hb_174865_020 0.0652652378 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
8 Hb_000703_130 0.0671845046 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
9 Hb_001235_230 0.0722760412 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
10 Hb_007576_210 0.0739271952 - - PREDICTED: protein furry homolog [Jatropha curcas]
11 Hb_000836_020 0.0747413396 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
12 Hb_052764_060 0.0751623822 - - XPA-binding protein, putative [Ricinus communis]
13 Hb_000176_130 0.0777224325 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
14 Hb_000661_200 0.0780068654 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
15 Hb_011202_020 0.0781521655 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
16 Hb_000069_410 0.0807710389 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
17 Hb_011671_230 0.0808960839 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000665_230 0.08096945 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
19 Hb_007818_030 0.0811676324 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
20 Hb_004884_150 0.0814118028 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000949_010 Hb_000949_010 Hb_003284_030 Hb_003284_030 Hb_000949_010--Hb_003284_030 Hb_011947_050 Hb_011947_050 Hb_000949_010--Hb_011947_050 Hb_000176_100 Hb_000176_100 Hb_000949_010--Hb_000176_100 Hb_003581_170 Hb_003581_170 Hb_000949_010--Hb_003581_170 Hb_001959_020 Hb_001959_020 Hb_000949_010--Hb_001959_020 Hb_174865_020 Hb_174865_020 Hb_000949_010--Hb_174865_020 Hb_004884_150 Hb_004884_150 Hb_003284_030--Hb_004884_150 Hb_003284_030--Hb_174865_020 Hb_003284_030--Hb_000176_100 Hb_001235_230 Hb_001235_230 Hb_003284_030--Hb_001235_230 Hb_018133_050 Hb_018133_050 Hb_003284_030--Hb_018133_050 Hb_011947_050--Hb_174865_020 Hb_011947_050--Hb_003284_030 Hb_003211_040 Hb_003211_040 Hb_011947_050--Hb_003211_040 Hb_007576_210 Hb_007576_210 Hb_011947_050--Hb_007576_210 Hb_002333_050 Hb_002333_050 Hb_011947_050--Hb_002333_050 Hb_000176_100--Hb_001959_020 Hb_000176_100--Hb_003581_170 Hb_005357_260 Hb_005357_260 Hb_000176_100--Hb_005357_260 Hb_000703_130 Hb_000703_130 Hb_000176_100--Hb_000703_130 Hb_011689_030 Hb_011689_030 Hb_000176_100--Hb_011689_030 Hb_000105_040 Hb_000105_040 Hb_003581_170--Hb_000105_040 Hb_001699_280 Hb_001699_280 Hb_003581_170--Hb_001699_280 Hb_011242_060 Hb_011242_060 Hb_003581_170--Hb_011242_060 Hb_000836_020 Hb_000836_020 Hb_003581_170--Hb_000836_020 Hb_001959_020--Hb_003581_170 Hb_000661_200 Hb_000661_200 Hb_001959_020--Hb_000661_200 Hb_000069_410 Hb_000069_410 Hb_001959_020--Hb_000069_410 Hb_128743_010 Hb_128743_010 Hb_001959_020--Hb_128743_010 Hb_174865_020--Hb_003211_040 Hb_000174_290 Hb_000174_290 Hb_174865_020--Hb_000174_290 Hb_174865_020--Hb_018133_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.67724 24.601 7.79107 9.17928 16.0817 14.247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.6337 4.37316 7.64787 14.0194 12.8941

CAGE analysis