Hb_003284_030

Information

Type transcription factor
Description TF Family: Orphans
Location Contig3284: 41903-64756
Sequence    

Annotation

kegg
ID rcu:RCOM_0852800
description hypothetical protein
nr
ID XP_012082458.1
description PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9LFQ3
description Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana GN=SNL2 PE=1 SV=2
trembl
ID A0A067LAJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09676 PE=4 SV=1
Gene Ontology
ID GO:0006355
description paired amphipathic helix protein sin3-like 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34469: 51201-65192 , PASA_asmbl_34470: 45148-52797
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003284_030 0.0 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
2 Hb_000949_010 0.0492375884 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
3 Hb_004884_150 0.0605478856 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
4 Hb_174865_020 0.0669294308 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
5 Hb_000176_100 0.0674665828 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
6 Hb_001235_230 0.0685417786 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
7 Hb_018133_050 0.0705075477 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
8 Hb_011947_050 0.0713144364 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
9 Hb_001959_020 0.0736052286 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
10 Hb_052764_060 0.0762786955 - - XPA-binding protein, putative [Ricinus communis]
11 Hb_157966_010 0.0767109371 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
12 Hb_023226_080 0.076978801 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
13 Hb_000069_410 0.0781629826 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
14 Hb_001821_090 0.0787633194 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
15 Hb_011202_020 0.0794121369 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
16 Hb_000046_180 0.080576033 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
17 Hb_005357_260 0.0806821323 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
18 Hb_000025_320 0.080777138 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
19 Hb_028487_010 0.0811706739 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
20 Hb_000406_020 0.0820144772 - - -

Gene co-expression network

sample Hb_003284_030 Hb_003284_030 Hb_000949_010 Hb_000949_010 Hb_003284_030--Hb_000949_010 Hb_004884_150 Hb_004884_150 Hb_003284_030--Hb_004884_150 Hb_174865_020 Hb_174865_020 Hb_003284_030--Hb_174865_020 Hb_000176_100 Hb_000176_100 Hb_003284_030--Hb_000176_100 Hb_001235_230 Hb_001235_230 Hb_003284_030--Hb_001235_230 Hb_018133_050 Hb_018133_050 Hb_003284_030--Hb_018133_050 Hb_011947_050 Hb_011947_050 Hb_000949_010--Hb_011947_050 Hb_000949_010--Hb_000176_100 Hb_003581_170 Hb_003581_170 Hb_000949_010--Hb_003581_170 Hb_001959_020 Hb_001959_020 Hb_000949_010--Hb_001959_020 Hb_000949_010--Hb_174865_020 Hb_009615_170 Hb_009615_170 Hb_004884_150--Hb_009615_170 Hb_000174_060 Hb_000174_060 Hb_004884_150--Hb_000174_060 Hb_005357_260 Hb_005357_260 Hb_004884_150--Hb_005357_260 Hb_000025_320 Hb_000025_320 Hb_004884_150--Hb_000025_320 Hb_023226_080 Hb_023226_080 Hb_004884_150--Hb_023226_080 Hb_174865_020--Hb_011947_050 Hb_003211_040 Hb_003211_040 Hb_174865_020--Hb_003211_040 Hb_000174_290 Hb_000174_290 Hb_174865_020--Hb_000174_290 Hb_174865_020--Hb_018133_050 Hb_000176_100--Hb_001959_020 Hb_000176_100--Hb_003581_170 Hb_000176_100--Hb_005357_260 Hb_000703_130 Hb_000703_130 Hb_000176_100--Hb_000703_130 Hb_011689_030 Hb_011689_030 Hb_000176_100--Hb_011689_030 Hb_011202_020 Hb_011202_020 Hb_001235_230--Hb_011202_020 Hb_000261_030 Hb_000261_030 Hb_001235_230--Hb_000261_030 Hb_000176_130 Hb_000176_130 Hb_001235_230--Hb_000176_130 Hb_002044_170 Hb_002044_170 Hb_001235_230--Hb_002044_170 Hb_001235_230--Hb_005357_260 Hb_000035_410 Hb_000035_410 Hb_001235_230--Hb_000035_410 Hb_157966_010 Hb_157966_010 Hb_018133_050--Hb_157966_010 Hb_000832_320 Hb_000832_320 Hb_018133_050--Hb_000832_320 Hb_006663_040 Hb_006663_040 Hb_018133_050--Hb_006663_040 Hb_052764_060 Hb_052764_060 Hb_018133_050--Hb_052764_060 Hb_000959_040 Hb_000959_040 Hb_018133_050--Hb_000959_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1019 30.9403 10.1826 11.2781 24.4346 20.8743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.44546 6.49096 14.1877 21.6777 16.6903

CAGE analysis