Hb_052764_060

Information

Type -
Description -
Location Contig52764: 34339-39794
Sequence    

Annotation

kegg
ID rcu:RCOM_1063020
description XPA-binding protein, putative
nr
ID XP_002521433.1
description XPA-binding protein, putative [Ricinus communis]
swissprot
ID Q9DCD2
description Pre-mRNA-splicing factor SYF1 OS=Mus musculus GN=Xab2 PE=2 SV=1
trembl
ID B9S614
description XPA-binding protein, putative OS=Ricinus communis GN=RCOM_1063020 PE=4 SV=1
Gene Ontology
ID GO:0005634
description pre-mrna-splicing factor syf1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47119: 31765-33502 , PASA_asmbl_47121: 34191-39727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052764_060 0.0 - - XPA-binding protein, putative [Ricinus communis]
2 Hb_006663_040 0.0444042229 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
3 Hb_000661_200 0.0545341197 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
4 Hb_000544_060 0.0644689893 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
5 Hb_018133_050 0.0673054344 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
6 Hb_000832_320 0.0682104108 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
7 Hb_004480_040 0.0733509593 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
8 Hb_000949_010 0.0751623822 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
9 Hb_000176_100 0.0758439125 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
10 Hb_157966_010 0.0762544837 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
11 Hb_003284_030 0.0762786955 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
12 Hb_000260_640 0.0788754473 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
13 Hb_007813_030 0.080600467 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
14 Hb_128743_010 0.0814530773 - - RNA-binding protein, putative [Ricinus communis]
15 Hb_001959_020 0.0837110578 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
16 Hb_000189_100 0.0847374816 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
17 Hb_000960_100 0.0856636059 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
18 Hb_005539_090 0.086226161 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
19 Hb_000321_150 0.0868682079 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
20 Hb_000703_130 0.0871911778 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]

Gene co-expression network

sample Hb_052764_060 Hb_052764_060 Hb_006663_040 Hb_006663_040 Hb_052764_060--Hb_006663_040 Hb_000661_200 Hb_000661_200 Hb_052764_060--Hb_000661_200 Hb_000544_060 Hb_000544_060 Hb_052764_060--Hb_000544_060 Hb_018133_050 Hb_018133_050 Hb_052764_060--Hb_018133_050 Hb_000832_320 Hb_000832_320 Hb_052764_060--Hb_000832_320 Hb_004480_040 Hb_004480_040 Hb_052764_060--Hb_004480_040 Hb_006663_040--Hb_000832_320 Hb_006663_040--Hb_018133_050 Hb_000189_100 Hb_000189_100 Hb_006663_040--Hb_000189_100 Hb_157966_010 Hb_157966_010 Hb_006663_040--Hb_157966_010 Hb_006663_040--Hb_000544_060 Hb_000661_200--Hb_000544_060 Hb_007813_030 Hb_007813_030 Hb_000661_200--Hb_007813_030 Hb_000062_470 Hb_000062_470 Hb_000661_200--Hb_000062_470 Hb_001959_020 Hb_001959_020 Hb_000661_200--Hb_001959_020 Hb_001021_200 Hb_001021_200 Hb_000661_200--Hb_001021_200 Hb_001141_370 Hb_001141_370 Hb_000544_060--Hb_001141_370 Hb_001902_060 Hb_001902_060 Hb_000544_060--Hb_001902_060 Hb_000544_060--Hb_000832_320 Hb_018133_050--Hb_157966_010 Hb_018133_050--Hb_000832_320 Hb_000959_040 Hb_000959_040 Hb_018133_050--Hb_000959_040 Hb_003284_030 Hb_003284_030 Hb_018133_050--Hb_003284_030 Hb_000832_320--Hb_004480_040 Hb_000832_320--Hb_000959_040 Hb_000169_130 Hb_000169_130 Hb_004480_040--Hb_000169_130 Hb_000304_050 Hb_000304_050 Hb_004480_040--Hb_000304_050 Hb_000236_220 Hb_000236_220 Hb_004480_040--Hb_000236_220 Hb_000441_070 Hb_000441_070 Hb_004480_040--Hb_000441_070 Hb_000556_170 Hb_000556_170 Hb_004480_040--Hb_000556_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7103 33.1416 8.8833 8.7722 21.3254 14.8682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.48567 6.18051 10.4321 13.9044 13.6725

CAGE analysis