Hb_000959_040

Information

Type -
Description -
Location Contig959: 17219-40196
Sequence    

Annotation

kegg
ID rcu:RCOM_0075350
description hypothetical protein
nr
ID XP_012075268.1
description PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
swissprot
ID Q55GD2
description Protein DDB_G0268328 OS=Dictyostelium discoideum GN=DDB_G0268328 PE=4 SV=1
trembl
ID B9SW83
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0075350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63623: 17226-22145 , PASA_asmbl_63624: 22152-22563 , PASA_asmbl_63625: 22633-23862 , PASA_asmbl_63626: 24904-25456 , PASA_asmbl_63627: 24830-25299 , PASA_asmbl_63628: 25500-25742 , PASA_asmbl_63629: 25898-28976 , PASA_asmbl_63630: 29852-30397 , PASA_asmbl_63631: 30405-33269 , PASA_asmbl_63632: 33339-52643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_040 0.0 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
2 Hb_007676_100 0.0590230754 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
3 Hb_002188_110 0.0607405628 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
4 Hb_004718_010 0.0630317257 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
5 Hb_183963_030 0.0697989995 - - DNA binding protein, putative [Ricinus communis]
6 Hb_010578_060 0.0698463982 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
7 Hb_018133_050 0.0702945758 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
8 Hb_004659_080 0.0745353287 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
9 Hb_004543_030 0.0756401804 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
10 Hb_001080_270 0.0777701249 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
11 Hb_000832_320 0.078757297 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
12 Hb_000997_030 0.0806500713 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
13 Hb_006252_020 0.0807855367 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
14 Hb_001059_100 0.0813622538 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
15 Hb_000441_070 0.082093389 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
16 Hb_157966_010 0.0827626449 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
17 Hb_000046_010 0.0872354718 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
18 Hb_001967_030 0.0877189943 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
19 Hb_001247_070 0.0881052306 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
20 Hb_001268_350 0.0885175898 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]

Gene co-expression network

sample Hb_000959_040 Hb_000959_040 Hb_007676_100 Hb_007676_100 Hb_000959_040--Hb_007676_100 Hb_002188_110 Hb_002188_110 Hb_000959_040--Hb_002188_110 Hb_004718_010 Hb_004718_010 Hb_000959_040--Hb_004718_010 Hb_183963_030 Hb_183963_030 Hb_000959_040--Hb_183963_030 Hb_010578_060 Hb_010578_060 Hb_000959_040--Hb_010578_060 Hb_018133_050 Hb_018133_050 Hb_000959_040--Hb_018133_050 Hb_004659_080 Hb_004659_080 Hb_007676_100--Hb_004659_080 Hb_006252_020 Hb_006252_020 Hb_007676_100--Hb_006252_020 Hb_000331_330 Hb_000331_330 Hb_007676_100--Hb_000331_330 Hb_007676_100--Hb_002188_110 Hb_004128_050 Hb_004128_050 Hb_007676_100--Hb_004128_050 Hb_002188_110--Hb_183963_030 Hb_000025_360 Hb_000025_360 Hb_002188_110--Hb_000025_360 Hb_000441_070 Hb_000441_070 Hb_002188_110--Hb_000441_070 Hb_001247_070 Hb_001247_070 Hb_002188_110--Hb_001247_070 Hb_004718_010--Hb_010578_060 Hb_001268_350 Hb_001268_350 Hb_004718_010--Hb_001268_350 Hb_004543_030 Hb_004543_030 Hb_004718_010--Hb_004543_030 Hb_002301_080 Hb_002301_080 Hb_004718_010--Hb_002301_080 Hb_001080_270 Hb_001080_270 Hb_004718_010--Hb_001080_270 Hb_183963_030--Hb_000025_360 Hb_183963_030--Hb_010578_060 Hb_183963_030--Hb_004128_050 Hb_183963_030--Hb_001247_070 Hb_010578_060--Hb_002188_110 Hb_010578_060--Hb_001247_070 Hb_010578_060--Hb_004543_030 Hb_157966_010 Hb_157966_010 Hb_018133_050--Hb_157966_010 Hb_000832_320 Hb_000832_320 Hb_018133_050--Hb_000832_320 Hb_006663_040 Hb_006663_040 Hb_018133_050--Hb_006663_040 Hb_052764_060 Hb_052764_060 Hb_018133_050--Hb_052764_060 Hb_003284_030 Hb_003284_030 Hb_018133_050--Hb_003284_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9584 39.1083 6.64528 10.0567 31.2971 33.7049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4304 12.6087 15.6438 18.1067 13.5461

CAGE analysis