Hb_004659_080

Information

Type -
Description -
Location Contig4659: 48191-55979
Sequence    

Annotation

kegg
ID rcu:RCOM_1674900
description Transcription regulatory protein SWI3, putative
nr
ID XP_012081763.1
description PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
swissprot
ID Q8VY05
description SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3
trembl
ID A0A067K099
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18808 PE=4 SV=1
Gene Ontology
ID GO:0005634
description chromatin remodeling complex isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44072: 48522-56109
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004659_080 0.0 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
2 Hb_006252_020 0.0522972964 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
3 Hb_007676_100 0.0523489069 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
4 Hb_157966_010 0.0555082198 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
5 Hb_000622_250 0.0645830863 - - atpob1, putative [Ricinus communis]
6 Hb_001221_160 0.0651991565 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
7 Hb_002392_030 0.0701391656 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
8 Hb_000032_010 0.0706902609 - - crooked neck protein, putative [Ricinus communis]
9 Hb_003040_020 0.0713828032 - - PREDICTED: protein cereblon [Jatropha curcas]
10 Hb_008112_030 0.0734073916 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000959_040 0.0745353287 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
12 Hb_001417_050 0.0745752738 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
13 Hb_000856_140 0.0749340398 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
14 Hb_001221_150 0.0764639282 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
15 Hb_018133_050 0.0769092159 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
16 Hb_000997_030 0.0770176438 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
17 Hb_000544_060 0.0770428168 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
18 Hb_000010_360 0.0773834432 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
19 Hb_133047_010 0.0778194001 - - xanthine dehydrogenase, putative [Ricinus communis]
20 Hb_148909_030 0.0804343588 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004659_080 Hb_004659_080 Hb_006252_020 Hb_006252_020 Hb_004659_080--Hb_006252_020 Hb_007676_100 Hb_007676_100 Hb_004659_080--Hb_007676_100 Hb_157966_010 Hb_157966_010 Hb_004659_080--Hb_157966_010 Hb_000622_250 Hb_000622_250 Hb_004659_080--Hb_000622_250 Hb_001221_160 Hb_001221_160 Hb_004659_080--Hb_001221_160 Hb_002392_030 Hb_002392_030 Hb_004659_080--Hb_002392_030 Hb_002174_020 Hb_002174_020 Hb_006252_020--Hb_002174_020 Hb_003044_020 Hb_003044_020 Hb_006252_020--Hb_003044_020 Hb_004128_050 Hb_004128_050 Hb_006252_020--Hb_004128_050 Hb_001454_280 Hb_001454_280 Hb_006252_020--Hb_001454_280 Hb_008112_030 Hb_008112_030 Hb_006252_020--Hb_008112_030 Hb_000959_040 Hb_000959_040 Hb_007676_100--Hb_000959_040 Hb_007676_100--Hb_006252_020 Hb_000331_330 Hb_000331_330 Hb_007676_100--Hb_000331_330 Hb_002188_110 Hb_002188_110 Hb_007676_100--Hb_002188_110 Hb_007676_100--Hb_004128_050 Hb_157966_010--Hb_000622_250 Hb_018133_050 Hb_018133_050 Hb_157966_010--Hb_018133_050 Hb_006663_040 Hb_006663_040 Hb_157966_010--Hb_006663_040 Hb_000120_660 Hb_000120_660 Hb_157966_010--Hb_000120_660 Hb_157966_010--Hb_007676_100 Hb_000236_220 Hb_000236_220 Hb_000622_250--Hb_000236_220 Hb_005260_010 Hb_005260_010 Hb_000622_250--Hb_005260_010 Hb_000627_180 Hb_000627_180 Hb_000622_250--Hb_000627_180 Hb_000622_250--Hb_006252_020 Hb_015475_020 Hb_015475_020 Hb_001221_160--Hb_015475_020 Hb_003858_090 Hb_003858_090 Hb_001221_160--Hb_003858_090 Hb_003710_040 Hb_003710_040 Hb_001221_160--Hb_003710_040 Hb_133047_010 Hb_133047_010 Hb_001221_160--Hb_133047_010 Hb_004899_070 Hb_004899_070 Hb_001221_160--Hb_004899_070 Hb_002392_030--Hb_133047_010 Hb_002066_080 Hb_002066_080 Hb_002392_030--Hb_002066_080 Hb_004629_010 Hb_004629_010 Hb_002392_030--Hb_004629_010 Hb_148909_030 Hb_148909_030 Hb_002392_030--Hb_148909_030 Hb_000375_130 Hb_000375_130 Hb_002392_030--Hb_000375_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1501 24.7509 8.46085 8.99547 24.655 22.4589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.37732 6.41151 9.17646 14.3256 9.32684

CAGE analysis