Hb_003858_090

Information

Type -
Description -
Location Contig3858: 109656-116278
Sequence    

Annotation

kegg
ID rcu:RCOM_0858960
description Filamin-A-interacting protein, putative
nr
ID XP_002530596.1
description Filamin-A-interacting protein, putative [Ricinus communis]
swissprot
ID Q9FLH0
description Protein CROWDED NUCLEI 4 OS=Arabidopsis thaliana GN=CRWN4 PE=1 SV=2
trembl
ID B9SX77
description Filamin-A-interacting protein, putative OS=Ricinus communis GN=RCOM_0858960 PE=4 SV=1
Gene Ontology
ID GO:0016301
description nuclear matrix constituent protein 1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38820: 115729-116389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003858_090 0.0 - - Filamin-A-interacting protein, putative [Ricinus communis]
2 Hb_015475_020 0.0609441614 - - importin beta-1, putative [Ricinus communis]
3 Hb_001221_160 0.0663281562 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
4 Hb_001243_060 0.0731276208 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
5 Hb_000753_100 0.0802393622 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
6 Hb_001141_370 0.0808663751 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
7 Hb_000152_340 0.0815641644 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
8 Hb_001902_060 0.0833353774 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
9 Hb_007813_030 0.0849833933 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
10 Hb_000544_060 0.0855213715 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_000062_470 0.0857976478 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
12 Hb_002349_050 0.0886130714 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
13 Hb_000032_010 0.0897213186 - - crooked neck protein, putative [Ricinus communis]
14 Hb_004429_160 0.0899143519 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
15 Hb_000331_330 0.0908015543 - - PREDICTED: transcription factor GTE10 isoform X1 [Jatropha curcas]
16 Hb_000191_130 0.0911213044 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
17 Hb_144831_010 0.0956886015 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
18 Hb_004659_080 0.0961919343 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
19 Hb_003040_020 0.0968475346 - - PREDICTED: protein cereblon [Jatropha curcas]
20 Hb_000661_200 0.0989736618 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003858_090 Hb_003858_090 Hb_015475_020 Hb_015475_020 Hb_003858_090--Hb_015475_020 Hb_001221_160 Hb_001221_160 Hb_003858_090--Hb_001221_160 Hb_001243_060 Hb_001243_060 Hb_003858_090--Hb_001243_060 Hb_000753_100 Hb_000753_100 Hb_003858_090--Hb_000753_100 Hb_001141_370 Hb_001141_370 Hb_003858_090--Hb_001141_370 Hb_000152_340 Hb_000152_340 Hb_003858_090--Hb_000152_340 Hb_015475_020--Hb_001221_160 Hb_002349_050 Hb_002349_050 Hb_015475_020--Hb_002349_050 Hb_133047_010 Hb_133047_010 Hb_015475_020--Hb_133047_010 Hb_001080_270 Hb_001080_270 Hb_015475_020--Hb_001080_270 Hb_015475_020--Hb_000753_100 Hb_004659_080 Hb_004659_080 Hb_001221_160--Hb_004659_080 Hb_003710_040 Hb_003710_040 Hb_001221_160--Hb_003710_040 Hb_001221_160--Hb_133047_010 Hb_004899_070 Hb_004899_070 Hb_001221_160--Hb_004899_070 Hb_000116_060 Hb_000116_060 Hb_001243_060--Hb_000116_060 Hb_009780_100 Hb_009780_100 Hb_001243_060--Hb_009780_100 Hb_000230_430 Hb_000230_430 Hb_001243_060--Hb_000230_430 Hb_000331_330 Hb_000331_330 Hb_001243_060--Hb_000331_330 Hb_001243_060--Hb_001141_370 Hb_000032_010 Hb_000032_010 Hb_000753_100--Hb_000032_010 Hb_003540_160 Hb_003540_160 Hb_000753_100--Hb_003540_160 Hb_003040_020 Hb_003040_020 Hb_000753_100--Hb_003040_020 Hb_001117_190 Hb_001117_190 Hb_000753_100--Hb_001117_190 Hb_140049_020 Hb_140049_020 Hb_000753_100--Hb_140049_020 Hb_005188_060 Hb_005188_060 Hb_000753_100--Hb_005188_060 Hb_000544_060 Hb_000544_060 Hb_001141_370--Hb_000544_060 Hb_000236_220 Hb_000236_220 Hb_001141_370--Hb_000236_220 Hb_009771_100 Hb_009771_100 Hb_001141_370--Hb_009771_100 Hb_000340_110 Hb_000340_110 Hb_001141_370--Hb_000340_110 Hb_001902_060 Hb_001902_060 Hb_000152_340--Hb_001902_060 Hb_000953_030 Hb_000953_030 Hb_000152_340--Hb_000953_030 Hb_000140_080 Hb_000140_080 Hb_000152_340--Hb_000140_080 Hb_000152_340--Hb_000032_010 Hb_000152_340--Hb_000116_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.74941 9.8457 3.22668 3.28141 9.39387 6.75578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.71267 2.56784 2.19306 2.66134 3.70266

CAGE analysis