Hb_000236_220

Information

Type transcription factor
Description TF Family: HSF
Location Contig236: 200257-204816
Sequence    

Annotation

kegg
ID rcu:RCOM_0523380
description DNA binding protein, putative
nr
ID XP_012071084.1
description PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
swissprot
ID Q94BZ5
description Heat stress transcription factor A-5 OS=Arabidopsis thaliana GN=HSFA5 PE=2 SV=1
trembl
ID A0A067L5F4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01081 PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat stress transcription factor a-5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24689: 201665-204780
cDNA
(Sanger)
(ID:Location)		 032_F12.ab1: 202703-204605

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_220 0.0 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
2 Hb_093084_070 0.0417398127 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
3 Hb_003373_040 0.0561166203 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
4 Hb_004480_040 0.0631988423 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
5 Hb_005260_010 0.0634552197 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
6 Hb_001141_370 0.0694824642 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
7 Hb_000441_070 0.0720270159 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
8 Hb_157966_010 0.0734067798 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
9 Hb_000556_170 0.0738920332 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
10 Hb_000622_250 0.0750499316 - - atpob1, putative [Ricinus communis]
11 Hb_074969_010 0.0778428963 - - hypothetical protein JCGZ_23339 [Jatropha curcas]
12 Hb_008103_060 0.0780488153 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
13 Hb_000768_180 0.0784985187 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
14 Hb_000169_130 0.0789474824 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
15 Hb_000594_040 0.0815216025 - - hypothetical protein L484_013922 [Morus notabilis]
16 Hb_000418_140 0.0826030534 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
17 Hb_000236_410 0.0832466082 - - Paramyosin, putative [Ricinus communis]
18 Hb_007676_100 0.0836689964 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
19 Hb_000061_490 0.0839104637 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
20 Hb_006252_020 0.0839488131 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_220 Hb_000236_220 Hb_093084_070 Hb_093084_070 Hb_000236_220--Hb_093084_070 Hb_003373_040 Hb_003373_040 Hb_000236_220--Hb_003373_040 Hb_004480_040 Hb_004480_040 Hb_000236_220--Hb_004480_040 Hb_005260_010 Hb_005260_010 Hb_000236_220--Hb_005260_010 Hb_001141_370 Hb_001141_370 Hb_000236_220--Hb_001141_370 Hb_000441_070 Hb_000441_070 Hb_000236_220--Hb_000441_070 Hb_093084_070--Hb_003373_040 Hb_000236_410 Hb_000236_410 Hb_093084_070--Hb_000236_410 Hb_001055_030 Hb_001055_030 Hb_093084_070--Hb_001055_030 Hb_000061_490 Hb_000061_490 Hb_093084_070--Hb_000061_490 Hb_074969_010 Hb_074969_010 Hb_093084_070--Hb_074969_010 Hb_004109_030 Hb_004109_030 Hb_003373_040--Hb_004109_030 Hb_000070_080 Hb_000070_080 Hb_003373_040--Hb_000070_080 Hb_008103_060 Hb_008103_060 Hb_003373_040--Hb_008103_060 Hb_002078_220 Hb_002078_220 Hb_003373_040--Hb_002078_220 Hb_000169_130 Hb_000169_130 Hb_004480_040--Hb_000169_130 Hb_000304_050 Hb_000304_050 Hb_004480_040--Hb_000304_050 Hb_004480_040--Hb_000441_070 Hb_000832_320 Hb_000832_320 Hb_004480_040--Hb_000832_320 Hb_000556_170 Hb_000556_170 Hb_004480_040--Hb_000556_170 Hb_000594_040 Hb_000594_040 Hb_005260_010--Hb_000594_040 Hb_000768_180 Hb_000768_180 Hb_005260_010--Hb_000768_180 Hb_000640_310 Hb_000640_310 Hb_005260_010--Hb_000640_310 Hb_000191_130 Hb_000191_130 Hb_005260_010--Hb_000191_130 Hb_000418_140 Hb_000418_140 Hb_005260_010--Hb_000418_140 Hb_000544_060 Hb_000544_060 Hb_001141_370--Hb_000544_060 Hb_001243_060 Hb_001243_060 Hb_001141_370--Hb_001243_060 Hb_009771_100 Hb_009771_100 Hb_001141_370--Hb_009771_100 Hb_000340_110 Hb_000340_110 Hb_001141_370--Hb_000340_110 Hb_003858_090 Hb_003858_090 Hb_001141_370--Hb_003858_090 Hb_000046_010 Hb_000046_010 Hb_000441_070--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000441_070--Hb_001718_090 Hb_000322_150 Hb_000322_150 Hb_000441_070--Hb_000322_150 Hb_076693_020 Hb_076693_020 Hb_000441_070--Hb_076693_020 Hb_000441_070--Hb_000169_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7646 21.8386 6.45421 7.56712 13.5298 13.3525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.34148 6.91495 6.6847 10.4331 5.51552

CAGE analysis