Hb_000768_180

Information

Type -
Description -
Location Contig768: 180126-201406
Sequence    

Annotation

kegg
ID pop:POPTR_0013s06900g
description POPTRDRAFT_571339; hypothetical protein
nr
ID XP_012070313.1
description PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9I6G1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s06900g PE=4 SV=2
Gene Ontology
ID GO:0005488
description PREDICTED: uncharacterized protein LOC105632528

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57526: 180158-180739 , PASA_asmbl_57528: 186550-191961 , PASA_asmbl_57529: 192517-194068 , PASA_asmbl_57530: 194101-194547 , PASA_asmbl_57534: 196384-197774 , PASA_asmbl_57535: 198182-201274
cDNA
(Sanger)
(ID:Location)		 028_F22r.ab1: 172362-179975

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000768_180 0.0 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
2 Hb_005260_010 0.0565641351 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
3 Hb_000862_040 0.0729828321 - - ara4-interacting protein, putative [Ricinus communis]
4 Hb_000556_170 0.075216287 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
5 Hb_005542_050 0.0779849074 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
6 Hb_000236_220 0.0784985187 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
7 Hb_010712_090 0.0795002815 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
8 Hb_000191_130 0.0802308354 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
9 Hb_000648_080 0.0803410848 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
10 Hb_118840_050 0.0809097285 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
11 Hb_000398_020 0.0813593226 - - PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
12 Hb_004371_010 0.0819606399 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
13 Hb_000917_160 0.0820120018 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
14 Hb_001935_140 0.0842441111 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
15 Hb_000406_230 0.0845990815 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
16 Hb_011671_230 0.0846731839 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000823_030 0.0849776768 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
18 Hb_002784_010 0.0853649983 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
19 Hb_007894_130 0.0858535696 - - hypothetical protein RCOM_0584960 [Ricinus communis]
20 Hb_005104_010 0.0861754851 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000768_180 Hb_000768_180 Hb_005260_010 Hb_005260_010 Hb_000768_180--Hb_005260_010 Hb_000862_040 Hb_000862_040 Hb_000768_180--Hb_000862_040 Hb_000556_170 Hb_000556_170 Hb_000768_180--Hb_000556_170 Hb_005542_050 Hb_005542_050 Hb_000768_180--Hb_005542_050 Hb_000236_220 Hb_000236_220 Hb_000768_180--Hb_000236_220 Hb_010712_090 Hb_010712_090 Hb_000768_180--Hb_010712_090 Hb_000594_040 Hb_000594_040 Hb_005260_010--Hb_000594_040 Hb_005260_010--Hb_000236_220 Hb_000640_310 Hb_000640_310 Hb_005260_010--Hb_000640_310 Hb_000191_130 Hb_000191_130 Hb_005260_010--Hb_000191_130 Hb_000418_140 Hb_000418_140 Hb_005260_010--Hb_000418_140 Hb_000940_200 Hb_000940_200 Hb_000862_040--Hb_000940_200 Hb_005542_140 Hb_005542_140 Hb_000862_040--Hb_005542_140 Hb_000059_020 Hb_000059_020 Hb_000862_040--Hb_000059_020 Hb_001935_140 Hb_001935_140 Hb_000862_040--Hb_001935_140 Hb_005568_040 Hb_005568_040 Hb_000862_040--Hb_005568_040 Hb_002325_040 Hb_002325_040 Hb_000862_040--Hb_002325_040 Hb_000556_170--Hb_000640_310 Hb_000236_470 Hb_000236_470 Hb_000556_170--Hb_000236_470 Hb_003633_070 Hb_003633_070 Hb_000556_170--Hb_003633_070 Hb_001799_050 Hb_001799_050 Hb_000556_170--Hb_001799_050 Hb_140049_040 Hb_140049_040 Hb_000556_170--Hb_140049_040 Hb_004480_040 Hb_004480_040 Hb_000556_170--Hb_004480_040 Hb_010661_020 Hb_010661_020 Hb_005542_050--Hb_010661_020 Hb_005542_050--Hb_002325_040 Hb_000926_010 Hb_000926_010 Hb_005542_050--Hb_000926_010 Hb_005542_050--Hb_000556_170 Hb_010417_070 Hb_010417_070 Hb_005542_050--Hb_010417_070 Hb_002477_250 Hb_002477_250 Hb_005542_050--Hb_002477_250 Hb_093084_070 Hb_093084_070 Hb_000236_220--Hb_093084_070 Hb_003373_040 Hb_003373_040 Hb_000236_220--Hb_003373_040 Hb_000236_220--Hb_004480_040 Hb_001141_370 Hb_001141_370 Hb_000236_220--Hb_001141_370 Hb_000441_070 Hb_000441_070 Hb_000236_220--Hb_000441_070 Hb_001033_050 Hb_001033_050 Hb_010712_090--Hb_001033_050 Hb_000236_410 Hb_000236_410 Hb_010712_090--Hb_000236_410 Hb_008253_020 Hb_008253_020 Hb_010712_090--Hb_008253_020 Hb_002284_170 Hb_002284_170 Hb_010712_090--Hb_002284_170 Hb_008103_060 Hb_008103_060 Hb_010712_090--Hb_008103_060 Hb_010712_090--Hb_000862_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.65486 11.9883 4.50321 4.21717 6.87634 7.15944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09026 3.24438 2.20839 6.74903 4.01494

CAGE analysis