Hb_000926_010

Information

Type -
Description -
Location Contig926: 11424-30169
Sequence    

Annotation

kegg
ID rcu:RCOM_1302750
description bromodomain-containing protein
nr
ID XP_012070849.1
description PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
swissprot
ID Q9ULD4
description Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2
trembl
ID A0A067KSE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00903 PE=4 SV=1
Gene Ontology
ID GO:0005515
description bromodomain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62637: 11535-17846 , PASA_asmbl_62638: 11535-29360 , PASA_asmbl_62639: 11535-29360 , PASA_asmbl_62641: 13266-28657
cDNA
(Sanger)
(ID:Location)		 043_C23.ab1: 17266-17820 , 052_K15.ab1: 17266-17794

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_010 0.0 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
2 Hb_000723_110 0.0585749431 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
3 Hb_000023_320 0.059579475 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005542_050 0.0604351758 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
5 Hb_010661_020 0.0671496147 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
6 Hb_029695_020 0.0694034582 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
7 Hb_000264_080 0.0697423738 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
8 Hb_003470_030 0.0710098805 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
9 Hb_002477_250 0.0724382841 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
10 Hb_000227_310 0.0725318791 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
11 Hb_004410_070 0.0753146338 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
12 Hb_001674_040 0.0758925573 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
13 Hb_007576_220 0.0765050338 - - PREDICTED: kanadaptin [Jatropha curcas]
14 Hb_008165_030 0.0773406263 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
15 Hb_001047_200 0.0781712951 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
16 Hb_002325_040 0.0791119102 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
17 Hb_000264_070 0.0800907722 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
18 Hb_007017_070 0.0804273941 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
19 Hb_002903_140 0.081135892 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
20 Hb_012114_050 0.0847626203 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000926_010 Hb_000926_010 Hb_000723_110 Hb_000723_110 Hb_000926_010--Hb_000723_110 Hb_000023_320 Hb_000023_320 Hb_000926_010--Hb_000023_320 Hb_005542_050 Hb_005542_050 Hb_000926_010--Hb_005542_050 Hb_010661_020 Hb_010661_020 Hb_000926_010--Hb_010661_020 Hb_029695_020 Hb_029695_020 Hb_000926_010--Hb_029695_020 Hb_000264_080 Hb_000264_080 Hb_000926_010--Hb_000264_080 Hb_007017_070 Hb_007017_070 Hb_000723_110--Hb_007017_070 Hb_000809_160 Hb_000809_160 Hb_000723_110--Hb_000809_160 Hb_004410_070 Hb_004410_070 Hb_000723_110--Hb_004410_070 Hb_000094_090 Hb_000094_090 Hb_000723_110--Hb_000094_090 Hb_000373_230 Hb_000373_230 Hb_000723_110--Hb_000373_230 Hb_001636_050 Hb_001636_050 Hb_000023_320--Hb_001636_050 Hb_000264_070 Hb_000264_070 Hb_000023_320--Hb_000264_070 Hb_001047_200 Hb_001047_200 Hb_000023_320--Hb_001047_200 Hb_000679_340 Hb_000679_340 Hb_000023_320--Hb_000679_340 Hb_143766_110 Hb_143766_110 Hb_000023_320--Hb_143766_110 Hb_005542_050--Hb_010661_020 Hb_002325_040 Hb_002325_040 Hb_005542_050--Hb_002325_040 Hb_000556_170 Hb_000556_170 Hb_005542_050--Hb_000556_170 Hb_010417_070 Hb_010417_070 Hb_005542_050--Hb_010417_070 Hb_002477_250 Hb_002477_250 Hb_005542_050--Hb_002477_250 Hb_002282_060 Hb_002282_060 Hb_010661_020--Hb_002282_060 Hb_155159_010 Hb_155159_010 Hb_010661_020--Hb_155159_010 Hb_001231_090 Hb_001231_090 Hb_010661_020--Hb_001231_090 Hb_005539_040 Hb_005539_040 Hb_010661_020--Hb_005539_040 Hb_029695_020--Hb_005542_050 Hb_029695_020--Hb_001047_200 Hb_000823_030 Hb_000823_030 Hb_029695_020--Hb_000823_030 Hb_012114_050 Hb_012114_050 Hb_029695_020--Hb_012114_050 Hb_029695_020--Hb_000556_170 Hb_000061_490 Hb_000061_490 Hb_000264_080--Hb_000061_490 Hb_000227_310 Hb_000227_310 Hb_000264_080--Hb_000227_310 Hb_000264_080--Hb_004410_070 Hb_000336_110 Hb_000336_110 Hb_000264_080--Hb_000336_110 Hb_000264_080--Hb_007017_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0654 25.8039 18.0898 9.93674 13.9625 10.9235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.40503 5.6279 6.37852 11.9292 8.51691

CAGE analysis