Hb_000723_110

Information

Type -
Description -
Location Contig723: 132145-137191
Sequence    

Annotation

kegg
ID rcu:RCOM_1355220
description DNA binding protein, putative
nr
ID XP_012082413.1
description PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
swissprot
ID Q8LJT8
description TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1 PE=1 SV=2
trembl
ID A0A067K275
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16542 PE=4 SV=1
Gene Ontology
ID GO:0005634
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55759: 133246-134707 , PASA_asmbl_55761: 135808-137134
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_110 0.0 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
2 Hb_007017_070 0.0575548938 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
3 Hb_000926_010 0.0585749431 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
4 Hb_000809_160 0.0609591825 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
5 Hb_004410_070 0.0624410241 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
6 Hb_000094_090 0.0625679613 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
7 Hb_000373_230 0.0646780452 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
8 Hb_001754_030 0.0682573434 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
9 Hb_102438_030 0.0702706861 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
10 Hb_023226_070 0.0704259704 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004032_230 0.0708570278 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
12 Hb_002477_250 0.072523755 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
13 Hb_000915_060 0.0728001524 - - PREDICTED: uncharacterized protein LOC105628864 [Jatropha curcas]
14 Hb_003849_140 0.0738814561 - - PREDICTED: uncharacterized protein LOC105644697 [Jatropha curcas]
15 Hb_000866_450 0.0757380206 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_008165_030 0.0782146514 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
17 Hb_000264_070 0.078421798 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
18 Hb_002325_040 0.0805720332 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
19 Hb_001225_030 0.0811979725 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
20 Hb_000340_030 0.0815041483 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]

Gene co-expression network

sample Hb_000723_110 Hb_000723_110 Hb_007017_070 Hb_007017_070 Hb_000723_110--Hb_007017_070 Hb_000926_010 Hb_000926_010 Hb_000723_110--Hb_000926_010 Hb_000809_160 Hb_000809_160 Hb_000723_110--Hb_000809_160 Hb_004410_070 Hb_004410_070 Hb_000723_110--Hb_004410_070 Hb_000094_090 Hb_000094_090 Hb_000723_110--Hb_000094_090 Hb_000373_230 Hb_000373_230 Hb_000723_110--Hb_000373_230 Hb_007017_070--Hb_004410_070 Hb_000227_310 Hb_000227_310 Hb_007017_070--Hb_000227_310 Hb_030545_030 Hb_030545_030 Hb_007017_070--Hb_030545_030 Hb_102438_030 Hb_102438_030 Hb_007017_070--Hb_102438_030 Hb_002903_140 Hb_002903_140 Hb_007017_070--Hb_002903_140 Hb_000023_320 Hb_000023_320 Hb_000926_010--Hb_000023_320 Hb_005542_050 Hb_005542_050 Hb_000926_010--Hb_005542_050 Hb_010661_020 Hb_010661_020 Hb_000926_010--Hb_010661_020 Hb_029695_020 Hb_029695_020 Hb_000926_010--Hb_029695_020 Hb_000264_080 Hb_000264_080 Hb_000926_010--Hb_000264_080 Hb_000809_160--Hb_000094_090 Hb_002477_250 Hb_002477_250 Hb_000809_160--Hb_002477_250 Hb_031641_010 Hb_031641_010 Hb_000809_160--Hb_031641_010 Hb_000866_450 Hb_000866_450 Hb_000809_160--Hb_000866_450 Hb_000120_910 Hb_000120_910 Hb_000809_160--Hb_000120_910 Hb_000363_120 Hb_000363_120 Hb_000809_160--Hb_000363_120 Hb_002542_130 Hb_002542_130 Hb_004410_070--Hb_002542_130 Hb_000700_060 Hb_000700_060 Hb_004410_070--Hb_000700_060 Hb_010417_070 Hb_010417_070 Hb_004410_070--Hb_010417_070 Hb_000069_130 Hb_000069_130 Hb_004410_070--Hb_000069_130 Hb_000094_090--Hb_000363_120 Hb_000094_090--Hb_000373_230 Hb_023226_070 Hb_023226_070 Hb_000094_090--Hb_023226_070 Hb_004870_050 Hb_004870_050 Hb_000094_090--Hb_004870_050 Hb_000915_060 Hb_000915_060 Hb_000373_230--Hb_000915_060 Hb_001410_020 Hb_001410_020 Hb_000373_230--Hb_001410_020 Hb_000373_230--Hb_000363_120 Hb_000373_230--Hb_000809_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3524 23.926 18.2483 9.64201 12.8214 9.23672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.96542 7.48133 7.30205 9.75721 7.48989

CAGE analysis