Hb_031641_010

Information

Type -
Description -
Location Contig31641: 6217-11992
Sequence    

Annotation

kegg
ID rcu:RCOM_1203540
description hypothetical protein
nr
ID XP_002530299.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SWD0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1203540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33321: 6301-6599 , PASA_asmbl_33324: 9071-9658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031641_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000340_030 0.0552872045 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
3 Hb_000809_160 0.0586398317 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
4 Hb_002849_170 0.0604679668 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
5 Hb_001723_010 0.0608770288 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
6 Hb_000529_060 0.0613354856 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
7 Hb_004204_130 0.062163721 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
8 Hb_004517_020 0.0634141214 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
9 Hb_000363_120 0.0649005164 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
10 Hb_000120_910 0.0677278602 - - plant ubiquilin, putative [Ricinus communis]
11 Hb_003866_080 0.070978208 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
12 Hb_000069_130 0.072084418 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
13 Hb_000977_300 0.0736175097 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
14 Hb_003912_040 0.0754083826 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
15 Hb_001545_150 0.0755665787 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
16 Hb_184798_080 0.0755792926 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
17 Hb_004976_010 0.0756358075 - - hypothetical protein RCOM_1429110 [Ricinus communis]
18 Hb_000940_200 0.0759941895 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
19 Hb_004429_010 0.076422012 - - calcineurin-like phosphoesterase [Manihot esculenta]
20 Hb_000139_320 0.0771475003 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]

Gene co-expression network

sample Hb_031641_010 Hb_031641_010 Hb_000340_030 Hb_000340_030 Hb_031641_010--Hb_000340_030 Hb_000809_160 Hb_000809_160 Hb_031641_010--Hb_000809_160 Hb_002849_170 Hb_002849_170 Hb_031641_010--Hb_002849_170 Hb_001723_010 Hb_001723_010 Hb_031641_010--Hb_001723_010 Hb_000529_060 Hb_000529_060 Hb_031641_010--Hb_000529_060 Hb_004204_130 Hb_004204_130 Hb_031641_010--Hb_004204_130 Hb_000340_030--Hb_001723_010 Hb_000139_320 Hb_000139_320 Hb_000340_030--Hb_000139_320 Hb_000340_030--Hb_002849_170 Hb_003711_010 Hb_003711_010 Hb_000340_030--Hb_003711_010 Hb_000340_030--Hb_000529_060 Hb_000094_090 Hb_000094_090 Hb_000809_160--Hb_000094_090 Hb_002477_250 Hb_002477_250 Hb_000809_160--Hb_002477_250 Hb_000866_450 Hb_000866_450 Hb_000809_160--Hb_000866_450 Hb_000120_910 Hb_000120_910 Hb_000809_160--Hb_000120_910 Hb_000363_120 Hb_000363_120 Hb_000809_160--Hb_000363_120 Hb_001673_050 Hb_001673_050 Hb_002849_170--Hb_001673_050 Hb_002849_170--Hb_001723_010 Hb_002849_170--Hb_000529_060 Hb_004976_010 Hb_004976_010 Hb_002849_170--Hb_004976_010 Hb_004517_020 Hb_004517_020 Hb_001723_010--Hb_004517_020 Hb_001723_010--Hb_003711_010 Hb_001723_010--Hb_000139_320 Hb_000373_170 Hb_000373_170 Hb_001723_010--Hb_000373_170 Hb_001723_010--Hb_000120_910 Hb_000977_300 Hb_000977_300 Hb_000529_060--Hb_000977_300 Hb_000996_020 Hb_000996_020 Hb_000529_060--Hb_000996_020 Hb_000046_600 Hb_000046_600 Hb_000529_060--Hb_000046_600 Hb_005333_140 Hb_005333_140 Hb_000529_060--Hb_005333_140 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020 Hb_001171_030 Hb_001171_030 Hb_000529_060--Hb_001171_030 Hb_009252_050 Hb_009252_050 Hb_004204_130--Hb_009252_050 Hb_004429_010 Hb_004429_010 Hb_004204_130--Hb_004429_010 Hb_002045_250 Hb_002045_250 Hb_004204_130--Hb_002045_250 Hb_004204_130--Hb_002849_170 Hb_133702_020 Hb_133702_020 Hb_004204_130--Hb_133702_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.66999 6.76719 4.8002 4.53544 3.17464 3.76837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.5481 2.71322 2.24332 4.11719 3.53129

CAGE analysis