Hb_133702_020

Information

Type -
Description -
Location Contig133702: 14504-16042
Sequence    

Annotation

kegg
ID rcu:RCOM_1436140
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002512558.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q0WP85
description Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1
trembl
ID B9RFN9
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1436140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133702_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_012055_110 0.0647677483 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
3 Hb_000066_150 0.0708573836 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
4 Hb_000059_230 0.0708785463 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
5 Hb_003124_160 0.072338452 - - dynamin, putative [Ricinus communis]
6 Hb_002007_110 0.0735790379 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
7 Hb_003805_040 0.0748077536 - - Sacsin [Glycine soja]
8 Hb_004204_130 0.0754032332 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
9 Hb_004429_010 0.0761968203 - - calcineurin-like phosphoesterase [Manihot esculenta]
10 Hb_007810_110 0.0771447477 - - PREDICTED: DNA/RNA-binding protein KIN17 [Jatropha curcas]
11 Hb_011174_020 0.0789226017 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
12 Hb_001935_160 0.0795297124 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
13 Hb_002027_280 0.0796159097 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
14 Hb_134362_010 0.0806337052 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
15 Hb_003943_010 0.0807902198 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009252_050 0.0815199955 - - protein binding protein, putative [Ricinus communis]
17 Hb_000336_020 0.0816041147 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
18 Hb_000358_100 0.0829034163 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
19 Hb_006839_010 0.0829233559 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
20 Hb_000265_090 0.0830679307 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]

Gene co-expression network

sample Hb_133702_020 Hb_133702_020 Hb_012055_110 Hb_012055_110 Hb_133702_020--Hb_012055_110 Hb_000066_150 Hb_000066_150 Hb_133702_020--Hb_000066_150 Hb_000059_230 Hb_000059_230 Hb_133702_020--Hb_000059_230 Hb_003124_160 Hb_003124_160 Hb_133702_020--Hb_003124_160 Hb_002007_110 Hb_002007_110 Hb_133702_020--Hb_002007_110 Hb_003805_040 Hb_003805_040 Hb_133702_020--Hb_003805_040 Hb_012055_110--Hb_002007_110 Hb_012055_110--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_012055_110--Hb_000879_040 Hb_000958_050 Hb_000958_050 Hb_012055_110--Hb_000958_050 Hb_002357_070 Hb_002357_070 Hb_012055_110--Hb_002357_070 Hb_005701_050 Hb_005701_050 Hb_012055_110--Hb_005701_050 Hb_000066_150--Hb_002007_110 Hb_010315_020 Hb_010315_020 Hb_000066_150--Hb_010315_020 Hb_000358_220 Hb_000358_220 Hb_000066_150--Hb_000358_220 Hb_000172_340 Hb_000172_340 Hb_000066_150--Hb_000172_340 Hb_004032_200 Hb_004032_200 Hb_000066_150--Hb_004032_200 Hb_006839_010 Hb_006839_010 Hb_000059_230--Hb_006839_010 Hb_009288_020 Hb_009288_020 Hb_000059_230--Hb_009288_020 Hb_000684_350 Hb_000684_350 Hb_000059_230--Hb_000684_350 Hb_001377_100 Hb_001377_100 Hb_000059_230--Hb_001377_100 Hb_000059_230--Hb_012055_110 Hb_003040_050 Hb_003040_050 Hb_000059_230--Hb_003040_050 Hb_000176_130 Hb_000176_130 Hb_003124_160--Hb_000176_130 Hb_004429_010 Hb_004429_010 Hb_003124_160--Hb_004429_010 Hb_002027_280 Hb_002027_280 Hb_003124_160--Hb_002027_280 Hb_011202_020 Hb_011202_020 Hb_003124_160--Hb_011202_020 Hb_005402_040 Hb_005402_040 Hb_003124_160--Hb_005402_040 Hb_000261_030 Hb_000261_030 Hb_003124_160--Hb_000261_030 Hb_123531_010 Hb_123531_010 Hb_002007_110--Hb_123531_010 Hb_005832_010 Hb_005832_010 Hb_002007_110--Hb_005832_010 Hb_000331_580 Hb_000331_580 Hb_002007_110--Hb_000331_580 Hb_006031_010 Hb_006031_010 Hb_002007_110--Hb_006031_010 Hb_009486_170 Hb_009486_170 Hb_003805_040--Hb_009486_170 Hb_000665_230 Hb_000665_230 Hb_003805_040--Hb_000665_230 Hb_001133_030 Hb_001133_030 Hb_003805_040--Hb_001133_030 Hb_008053_040 Hb_008053_040 Hb_003805_040--Hb_008053_040 Hb_003805_040--Hb_011202_020 Hb_002521_020 Hb_002521_020 Hb_003805_040--Hb_002521_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94215 4.8568 2.52382 3.90391 3.0842 3.06604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48575 1.86069 1.52531 3.01742 4.64616

CAGE analysis